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JF270478.1__AEO00987.1__X__00006

Bact-Vir

JF270478.1__AEO00987.1__X__00006

Identity

Accession:
JF270478 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Psychrobacter_phage_Psymv2

TaxID: 1071177

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-43
PDB
D2 high residues 114-239
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10065.15 best DUF2303 52.3 6.70e-14 100.0% 43.5%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.69 24.0 4.23e-01 75.4% 100.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.59 34.0 3.79e-01 92.9% 69.6%
2yh6D00 3.30.530.50 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.59 35.0 3.74e-01 93.7% 67.3%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 36.0 3.41e-01 96.0% 54.1%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 30.0 3.36e-01 82.5% 65.3%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 32.0 3.87e-01 96.0% 93.3%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.55 33.0 2.80e-01 91.3% 33.6%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 41.0 4.28e-01 96.0% 84.9%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.53 29.0 3.19e-01 96.0% 64.7%
3ostA00 3.30.310.220 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Fungal kinase associated-1 domain 0.53 33.0 3.45e-01 95.2% 65.5%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.93e-01 96.0% 78.0%
3oloA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 36.0 3.85e-01 95.2% 82.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 34.0 3.34e-01 95.2% 59.7%
6baoA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.60e-01 95.2% 66.4%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 31.0 3.48e-01 96.0% 77.8%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 42.0 4.27e-01 95.2% 93.3%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 31.0 3.78e-01 96.0% 96.3%
3gdiA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.77e-01 95.2% 82.9%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.88e-01 96.0% 77.7%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.90e-01 95.2% 86.2%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 32.0 2.95e-01 94.4% 49.1%
2jqjA01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 27.0 2.75e-01 89.7% 51.5%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3526482 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.65 32.0 3.54e-01 95.2% 56.2%
3509038 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 35.0 3.91e-01 94.4% 68.0%
3985160 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 44.0 4.57e-01 95.2% 80.9%
5043799 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 36.0 3.73e-01 95.2% 63.6%
3948384 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 42.0 4.45e-01 95.2% 80.9%
3579707 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 39.0 4.40e-01 95.2% 95.6%
3770073 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.57 37.0 2.57e-01 100.0% 21.1%
4033208 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 51.0 4.91e-01 98.4% 97.2%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.55 32.0 3.85e-01 96.0% 92.1%
3885751 331.4.1.1 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.55 32.0 3.57e-01 93.7% 73.7%
3743975 331.4.1.4 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › Fungal_KA1 0.55 34.0 3.61e-01 95.2% 68.7%
5048058 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 39.0 4.22e-01 96.0% 86.4%
5050353 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 41.0 4.00e-01 95.2% 73.3%
4945264 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 39.0 4.20e-01 95.2% 87.3%
4977581 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 40.0 4.22e-01 95.2% 86.1%
4319690 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 3.96e-01 95.2% 78.3%
4959068 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 39.0 2.95e-01 96.0% 31.1%
5033693 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 40.0 3.96e-01 95.2% 74.8%
4996179 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 2.60e-01 95.2% 19.8%
4999858 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.31e-01 96.0% 45.0%
4997160 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 38.0 4.19e-01 95.2% 95.0%
4980670 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 4.07e-01 95.2% 87.3%
4996829 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 39.0 2.69e-01 96.0% 22.8%
5083224 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 4.15e-01 95.2% 92.4%
4943531 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 41.0 4.26e-01 95.2% 89.2%
4944869 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 33.0 3.26e-01 97.6% 60.0%
3959925 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 37.0 4.11e-01 92.9% 93.0%
4989528 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 35.0 3.64e-01 95.2% 73.9%
5049432 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 38.0 2.78e-01 95.2% 27.5%
5053323 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 38.0 4.00e-01 96.0% 83.5%
5046055 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.52 40.0 4.11e-01 96.0% 85.0%
5083223 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.85e-01 96.0% 75.4%
4996177 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.88e-01 96.0% 77.6%
5044946 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 37.0 4.08e-01 96.0% 94.0%
5068527 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 36.0 3.89e-01 96.0% 83.6%
5002291 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 37.0 4.01e-01 95.2% 90.5%
6856 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 39.0 3.89e-01 96.0% 77.7%
3216043 223.2.1.31 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_2 0.51 41.0 3.80e-01 95.2% 67.3%
4977586 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 2.84e-01 95.2% 29.6%
3223498 223.1.1.13 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.50 37.0 3.72e-01 95.2% 74.6%
4958693 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 36.0 3.82e-01 96.0% 81.7%
5009916 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.50 25.0 2.71e-01 98.4% 53.3%
4980684 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 2.61e-01 95.2% 21.7%
D3 medium residues 51-112
PDB
Domain cluster: rep: OM334891.1__UKM17103.1__X__00024__D55-110
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10065.15 best DUF2303 33.0 5.20e-08 100.0% 21.9%