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JF461087.1__AEO97542.1__X__00126

Bact-Vir

JF461087.1__AEO97542.1__X__00126

Identity

Accession:
JF461087 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Andersonviridae› Felixounavirus› Salmonella_phage_FO1a

TaxID: 1087480

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-149_240-314
PDB
Domain cluster: rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00403__D272-405
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04095.23 best NAPRTase 87.1 2.10e-24 95.8% 56.5%
D2 high residues 151-234
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hj6A02 3.40.1620.20 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.68 42.0 4.87e-01 95.2% 91.4%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.63 50.0 4.84e-01 85.7% 100.0%
1o20A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.59 47.0 3.35e-01 86.9% 61.5%
3mzkB01 6.20.50.30 Special › Other non-globular › N-terminal domain of TfIIb › 0.56 26.0 3.31e-01 79.8% 84.2%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.55 28.0 3.48e-01 94.0% 77.8%
1vluA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 45.0 3.18e-01 86.9% 63.7%
7vtgA01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 3.26e-01 100.0% 40.5%
2z0rA00 3.40.1350.90 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › Uncharacterised protein PF11572, DUF3234 0.52 44.0 4.19e-01 91.7% 78.4%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.52 46.0 3.61e-01 97.6% 76.8%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 46.0 3.19e-01 100.0% 43.1%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 45.0 3.09e-01 100.0% 45.5%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.29e-01 100.0% 83.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3782709 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.61 53.0 3.50e-01 100.0% 80.3%
3602852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 30.0 3.49e-01 91.7% 68.3%
4952606 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.56 49.0 3.38e-01 100.0% 41.1%
3518786 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.55 46.0 4.31e-01 94.0% 80.0%
3226328 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.55 45.0 4.44e-01 92.9% 90.0%
4972895 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 42.0 3.11e-01 85.7% 47.5%
4947404 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.53 41.0 3.39e-01 85.7% 87.8%
4191066 2005.1.1.15 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP-sulfurylase 0.53 46.0 3.47e-01 100.0% 58.6%
3283280 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 47.0 3.28e-01 100.0% 79.6%
4307484 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 46.0 3.13e-01 100.0% 73.7%
5048983 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.53 45.0 3.14e-01 100.0% 38.4%
3416335 7523.1.1.2 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Transferrin 0.53 42.0 3.30e-01 86.9% 75.0%
3414029 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.52 45.0 3.03e-01 100.0% 72.9%
4241087 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 45.0 3.16e-01 100.0% 50.2%
4935857 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 42.0 2.88e-01 91.7% 87.3%
4326752 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.51 44.0 2.99e-01 100.0% 37.3%
3386304 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.50 39.0 3.23e-01 90.5% 43.5%
4979176 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.50 44.0 3.04e-01 100.0% 38.7%
D3 high residues 327-404
PDB
Domain cluster: rep: MW794162.1__QVW02071.1__2017DhaN_1100__00220__D182-242
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890693 2002.4.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.87 63.0 4.10e-01 88.5% 19.3%
3022172 375.12.1.0 ↗ few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related 0.77 53.0 5.87e-01 75.6% 88.9%
4991560 2002.1.1.75 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › QRPTase_C 0.65 45.0 3.14e-01 73.1% 23.5%
5044292 375.11.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ 0.61 43.0 4.57e-01 74.4% 93.8%
D4 medium residues 1-56
PDB