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JF704112.1__AEK07483.1__SEND513_37__00037

Bact-Vir

JF704112.1__AEK07483.1__SEND513_37__00037

Identity

Accession:
JF704112 ↗
Kingdom:
phage

Quality

67.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-89
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.87 79.0 7.68e-01 100.0% 95.8%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 80.0 5.65e-01 100.0% 37.4%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.87 78.0 5.43e-01 100.0% 32.7%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.86 60.0 4.61e-01 81.5% 35.3%
3uumA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.84 76.0 6.11e-01 100.0% 55.7%
4adzA00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.83 69.0 6.13e-01 98.5% 64.4%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.83 68.0 6.50e-01 89.2% 82.7%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.81 67.0 6.54e-01 100.0% 81.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.80 65.0 6.13e-01 95.4% 74.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 69.0 5.92e-01 100.0% 61.8%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.79 59.0 5.11e-01 78.5% 93.7%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.79 65.0 5.15e-01 92.3% 46.6%
1jogA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.78 68.0 5.23e-01 95.4% 45.2%
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.78 64.0 5.72e-01 89.2% 66.7%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.77 62.0 5.67e-01 90.8% 66.3%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.77 52.0 5.07e-01 72.3% 63.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.77 59.0 5.36e-01 83.1% 62.4%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.76 64.0 5.80e-01 96.9% 69.4%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.76 60.0 6.08e-01 86.2% 86.2%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.74 53.0 5.05e-01 90.8% 64.1%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 63.0 6.06e-01 98.5% 90.8%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.73 64.0 5.03e-01 100.0% 46.8%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.73 56.0 5.66e-01 83.1% 95.3%
3jc6D01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 63.0 4.84e-01 100.0% 79.6%
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 62.0 5.94e-01 96.9% 82.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 59.0 5.77e-01 92.3% 82.2%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.73 55.0 4.26e-01 83.1% 37.3%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.72 62.0 5.24e-01 100.0% 57.1%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.72 51.0 5.35e-01 75.4% 87.9%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 56.0 5.09e-01 89.2% 63.0%
1aj3A00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 58.0 5.11e-01 92.3% 61.2%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.70 60.0 5.30e-01 100.0% 67.6%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.69 60.0 4.37e-01 98.5% 87.4%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 56.0 4.21e-01 89.2% 91.3%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 51.0 5.17e-01 86.2% 87.1%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.67 55.0 4.48e-01 100.0% 49.3%
1b06A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.66 50.0 5.04e-01 89.2% 80.6%
4ywoA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 48.0 3.36e-01 78.5% 26.4%
2xokP00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.64 49.0 4.81e-01 87.7% 77.0%
3mopA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.63 45.0 3.90e-01 76.9% 100.0%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.62 42.0 4.39e-01 78.5% 78.3%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.62 35.0 3.28e-01 87.7% 42.9%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.61 42.0 4.56e-01 73.8% 96.1%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.61 45.0 4.58e-01 83.1% 88.5%
2b3tB01 6.10.140.1980 Special › Helix non-globular › Helix Hairpins › 0.60 42.0 4.20e-01 72.3% 87.7%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.58 41.0 2.66e-01 73.8% 15.5%
2x6hA03 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.54 45.0 3.25e-01 93.8% 75.0%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3598168 3755.1.1.0 alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.88 82.0 5.93e-01 100.0% 42.4%
3235839 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.88 80.0 5.66e-01 100.0% 36.0%
3707409 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.87 76.0 6.18e-01 95.4% 53.9%
3713135 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.85 79.0 6.48e-01 100.0% 66.4%
3735607 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.85 72.0 6.74e-01 100.0% 75.0%
3699468 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 77.0 5.34e-01 100.0% 51.0%
3493924 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.84 77.0 4.98e-01 100.0% 25.6%
3507551 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.84 73.0 6.37e-01 100.0% 64.2%
4941675 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.84 77.0 4.50e-01 100.0% 38.1%
3435097 4177.1.1.11 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › DUF632 0.84 75.0 4.92e-01 100.0% 50.2%
3168735 4177.1.1.9 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom 0.84 75.0 4.85e-01 100.0% 23.8%
3701046 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.83 75.0 6.59e-01 100.0% 71.6%
4980098 3834.1.1.0 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain 0.82 73.0 4.81e-01 100.0% 76.2%
4978412 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.82 62.0 4.43e-01 87.7% 29.7%
3808261 3826.1.1.27 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF3754 0.82 73.0 6.70e-01 100.0% 76.5%
3240466 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 64.0 5.62e-01 84.6% 57.9%
3219759 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.82 68.0 5.30e-01 90.8% 50.4%
3408094 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.82 74.0 5.76e-01 100.0% 51.9%
3196934 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.82 73.0 5.48e-01 100.0% 41.9%
4843075 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.81 62.0 5.39e-01 81.5% 57.3%
3927738 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.81 66.0 5.82e-01 89.2% 63.2%
3486289 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.81 70.0 5.68e-01 96.9% 53.0%
3028309 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.80 62.0 5.54e-01 81.5% 60.2%
5039854 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.80 63.0 6.04e-01 90.8% 73.3%
None 0.80 71.0 4.65e-01 100.0% 30.4%
1291200 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.79 72.0 4.61e-01 100.0% 26.2%
3437287 5086.1.1.199 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PF31016 0.79 68.0 5.02e-01 98.5% 60.6%
4110261 3748.1.1.2 extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › CSN5_C 0.79 70.0 6.37e-01 98.5% 78.8%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.78 69.0 5.58e-01 100.0% 69.6%
3404270 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.78 71.0 5.60e-01 100.0% 50.8%
3610620 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 67.0 5.51e-01 93.8% 53.0%
3179413 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.78 68.0 4.24e-01 100.0% 18.8%
3596744 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 68.0 6.16e-01 93.8% 82.4%
3562849 148.1.3.254 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KIF21A_4th 0.77 67.0 4.60e-01 100.0% 70.9%
3793286 4177.1.1.2 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.76 65.0 4.66e-01 100.0% 32.0%
3589446 2004.1.1.301 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.76 68.0 4.02e-01 100.0% 32.2%
3470544 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.75 52.0 4.60e-01 72.3% 50.5%
4879470 5057.1.1.1 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.75 64.0 6.09e-01 96.9% 81.3%
4946656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 64.0 5.28e-01 100.0% 59.2%
4406905 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.73 55.0 5.46e-01 84.6% 78.6%
3244591 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.73 62.0 4.76e-01 100.0% 40.6%
3501427 3755.3.1.295 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 0.70 62.0 4.80e-01 100.0% 63.4%
3474500 632.7.1.25 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.69 56.0 5.14e-01 89.2% 68.2%
3449605 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.68 58.0 4.92e-01 100.0% 57.3%
4354962 3390.1.1.0 extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT 0.61 40.0 4.38e-01 72.3% 90.0%
4541657 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.61 47.0 4.45e-01 92.3% 71.2%
3678192 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.56 43.0 3.41e-01 87.7% 61.3%
5005807 2003.1.1.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Shikimate_DH 0.56 48.0 3.25e-01 100.0% 61.9%