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JF767208.1__AEI74471.1__phi13O_gp45__00045

Bact-Vir

JF767208.1__AEI74471.1__phi13O_gp45__00045

Identity

Accession:
JF767208 ↗
Kingdom:
phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phiCP13O

TaxID: 1042122

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-78
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04404.18 best ERF 34.3 3.00e-08 93.2% 44.4%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.72 34.0 3.61e-01 100.0% 48.5%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.67 28.0 3.40e-01 94.6% 54.3%
2l2mA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 32.0 3.34e-01 89.2% 51.4%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.61 36.0 2.54e-01 74.3% 17.2%
7cijA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.59 46.0 3.04e-01 86.5% 63.0%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 36.0 3.76e-01 100.0% 66.2%
1d2iA00 3.40.91.20 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 50.0 3.66e-01 98.6% 33.3%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 42.0 3.01e-01 75.7% 97.4%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.99e-01 74.3% 32.7%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 35.0 3.70e-01 100.0% 71.2%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.56 29.0 2.76e-01 97.3% 40.9%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.53e-01 71.6% 89.1%
5ib9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 45.0 3.13e-01 98.6% 93.3%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 39.0 3.03e-01 79.7% 69.6%
3pp9B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 3.15e-01 83.8% 63.2%
3cwcA02 3.90.1510.10 Alpha Beta › Alpha-Beta Complex › Glycerate kinase, domain 2 › Glycerate kinase, domain 2 0.52 40.0 2.96e-01 89.2% 95.7%
2wzpR02 3.55.50.50 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Phage tail base-plate attachment protein, domain D4 0.51 37.0 3.43e-01 94.6% 58.6%
2uvaG06 1.20.930.70 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.51 36.0 3.12e-01 74.3% 75.6%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.50 35.0 3.34e-01 73.0% 83.9%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 43.0 3.14e-01 100.0% 82.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039841 330.1.1.36 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.87 80.0 6.84e-01 98.6% 65.5%
4012111 812.2.1.0 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain 0.79 37.0 4.00e-01 100.0% 52.4%
7696 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.72 34.0 3.57e-01 100.0% 47.1%
5030935 2008.1.1.39 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Endonuc-BglII 0.64 55.0 4.21e-01 98.6% 68.3%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 41.0 3.83e-01 94.6% 51.6%
4198253 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.57 49.0 3.83e-01 100.0% 69.1%
4973231 304.48.1.20 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 0.56 39.0 2.81e-01 75.7% 32.9%
3830346 207.1.1.137 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.54 36.0 2.35e-01 70.3% 44.7%
3193113 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.54 45.0 2.75e-01 93.2% 80.4%
3608304 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.82e-01 90.5% 72.7%
3164685 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 46.0 3.73e-01 98.6% 76.6%
3838607 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.52 44.0 3.60e-01 97.3% 77.2%
5066743 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.67e-01 78.4% 83.5%
4972484 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 44.0 4.01e-01 100.0% 88.6%
4937870 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 42.0 3.96e-01 94.6% 90.5%
5053177 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.35e-01 94.6% 67.3%
5040415 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 42.0 3.90e-01 100.0% 89.5%
5015050 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.51 43.0 3.10e-01 98.6% 68.7%
4957408 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.51 43.0 3.91e-01 100.0% 87.6%
3738674 101.1.2.207 ↗ alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH 0.51 37.0 3.35e-01 81.1% 76.4%
4160692 171.1.1.1 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 0.51 40.0 2.96e-01 91.9% 75.1%
5080834 1036.1.1.1 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.50 43.0 3.91e-01 100.0% 84.8%
1888906 2002.1.1.39 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 0.50 43.0 2.78e-01 100.0% 72.2%