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JF770475.1__AEI91230.1__X__00030

Bact-Vir

JF770475.1__AEI91230.1__X__00030

Identity

Accession:
JF770475 ↗
Kingdom:
phage

Quality

89.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Lindendrivevirus› Escherichia_phage_phiEB49

TaxID: 1048207

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-63
PDB
Domain cluster: rep: ON014757.1__UQS95251.1__Pam5_35__00035__D105-158
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.29e-01 96.7% 83.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.83e-01 91.7% 77.1%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.00e-01 83.3% 87.9%
3pnrA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 53.0 3.66e-01 100.0% 44.2%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.81e-01 91.7% 77.9%
3ntkA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.47e-01 100.0% 66.3%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.75e-01 93.3% 93.2%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.61 44.0 3.16e-01 78.3% 65.9%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.61 48.0 4.14e-01 88.3% 93.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.94e-01 91.7% 95.2%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 46.0 3.61e-01 90.0% 73.0%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 48.0 3.85e-01 100.0% 78.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.22e-01 95.0% 78.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.77e-01 95.0% 98.4%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.81e-01 93.3% 93.2%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 52.0 4.75e-01 100.0% 76.2%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.58 51.0 3.91e-01 100.0% 68.3%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 31.0 3.02e-01 98.3% 45.5%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 46.0 4.15e-01 98.3% 71.3%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 46.0 3.93e-01 95.0% 72.2%
4b0eD00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.57 43.0 3.81e-01 88.3% 81.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 47.0 4.12e-01 100.0% 87.1%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.11e-01 100.0% 71.6%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.20e-01 78.3% 71.2%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.47e-01 93.3% 46.2%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.01e-01 100.0% 99.0%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 42.0 2.72e-01 86.7% 87.8%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 45.0 4.17e-01 100.0% 96.2%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 46.0 3.46e-01 100.0% 60.4%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 36.0 2.92e-01 70.0% 46.4%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 42.0 3.68e-01 100.0% 84.3%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 43.0 3.54e-01 100.0% 96.1%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 2.80e-01 75.0% 57.5%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.52 37.0 2.61e-01 81.7% 82.8%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.52 40.0 3.39e-01 86.7% 94.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.24e-01 86.7% 80.3%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 43.0 3.96e-01 100.0% 100.0%
3lzqA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.51 42.0 3.23e-01 98.3% 73.2%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 42.0 4.03e-01 100.0% 96.0%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.29e-01 86.7% 84.5%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 2.59e-01 100.0% 16.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4008273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 66.0 6.23e-01 100.0% 88.6%
3315674 375.1.1.178 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn-ribbon_GIR1 0.65 38.0 4.56e-01 80.0% 100.0%
3606476 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.62 42.0 4.38e-01 75.0% 78.2%
4607892 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 36.0 4.18e-01 81.7% 90.0%
3521698 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 46.0 3.70e-01 86.7% 71.7%
3337318 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 44.0 3.46e-01 85.0% 73.6%
3553821 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.70e-01 86.7% 71.7%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 48.0 3.88e-01 93.3% 48.3%
4935901 2.1.1.382 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 0.58 41.0 3.74e-01 78.3% 97.8%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.58 50.0 3.73e-01 100.0% 46.9%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.54e-01 95.0% 84.3%
4519252 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.58 49.0 4.05e-01 98.3% 74.8%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.73e-01 88.3% 96.4%
3547093 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 49.0 4.32e-01 100.0% 64.4%
3398310 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 44.0 3.66e-01 86.7% 74.8%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 46.0 4.64e-01 91.7% 96.7%
3538619 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.48e-01 86.7% 67.7%
3710893 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 50.0 3.88e-01 100.0% 62.3%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 46.0 4.04e-01 96.7% 67.4%
4444484 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 47.0 4.08e-01 100.0% 92.0%
4946798 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 3.98e-01 96.7% 90.0%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.55 41.0 4.03e-01 83.3% 98.5%
5042797 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 46.0 4.64e-01 96.7% 98.3%
4317931 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.54 44.0 4.06e-01 96.7% 74.1%
2697431 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.54 39.0 3.43e-01 85.0% 79.6%
3630007 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.54 40.0 3.38e-01 83.3% 62.7%
3172792 1.1.7.24 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 0.54 44.0 3.84e-01 100.0% 95.2%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.54 40.0 3.42e-01 85.0% 72.7%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.53 43.0 3.79e-01 100.0% 58.0%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 45.0 3.82e-01 100.0% 64.5%
3622767 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.53 39.0 3.48e-01 83.3% 69.5%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 38.0 3.57e-01 80.0% 68.8%
3961371 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 43.0 4.01e-01 93.3% 87.5%
4854964 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.53 44.0 4.03e-01 100.0% 87.2%
3861569 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.53 40.0 3.34e-01 86.7% 73.0%
3526900 269.1.1.0 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like 0.52 42.0 2.69e-01 100.0% 42.3%
3440964 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 40.0 2.57e-01 85.0% 21.9%
5057901 375.10.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.52 34.0 3.66e-01 85.0% 82.0%
3594578 4.18.1.0 ↗ beta barrels › SH3 › Plus3 › Plus3 0.51 43.0 3.56e-01 100.0% 89.2%
3614175 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 35.0 2.92e-01 73.3% 39.1%
3511826 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 42.0 3.64e-01 100.0% 96.2%
3945528 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 42.0 3.94e-01 100.0% 90.0%
5030944 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 31.0 3.50e-01 78.3% 80.0%
4015435 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.50 35.0 3.06e-01 73.3% 70.5%
4567161 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 37.0 2.68e-01 80.0% 74.6%
3057477 220.1.1.146 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_NDK7_N 0.50 38.0 3.38e-01 85.0% 76.9%