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JF770475.1__AEI91257.1__X__00057

Bact-Vir

JF770475.1__AEI91257.1__X__00057

Identity

Accession:
JF770475 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Lindendrivevirus› Escherichia_phage_phiEB49

TaxID: 1048207

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 49.0 4.43e-01 85.5% 52.1%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 52.0 4.97e-01 81.8% 78.8%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 52.0 4.91e-01 81.8% 77.6%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 51.0 4.88e-01 81.8% 81.8%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 50.0 4.67e-01 81.8% 72.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 4.80e-01 81.8% 76.1%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 54.0 4.42e-01 92.7% 89.1%
4ifdE00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.66 45.0 2.88e-01 70.9% 87.3%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 52.0 4.10e-01 92.7% 94.5%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 53.0 4.41e-01 92.7% 90.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.42e-01 100.0% 93.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 5.12e-01 96.4% 100.0%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.45e-01 100.0% 93.3%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 56.0 5.31e-01 100.0% 84.8%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 43.0 3.98e-01 83.6% 53.4%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 4.96e-01 100.0% 70.5%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.73e-01 94.5% 43.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 54.0 5.35e-01 100.0% 91.5%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 51.0 3.39e-01 94.5% 52.5%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 4.74e-01 100.0% 71.2%
4ntcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 4.02e-01 96.4% 98.4%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.98e-01 90.9% 94.6%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.59e-01 100.0% 74.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.81e-01 100.0% 80.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 47.0 4.50e-01 100.0% 75.8%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 47.0 3.94e-01 90.9% 54.8%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 3.63e-01 90.9% 46.5%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.54e-01 100.0% 92.0%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 48.0 3.91e-01 89.1% 68.9%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.58 43.0 3.58e-01 80.0% 51.5%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 47.0 4.39e-01 100.0% 73.6%
3b59A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 39.0 3.12e-01 70.9% 100.0%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.41e-01 98.2% 75.0%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 40.0 3.73e-01 89.1% 58.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 2.91e-01 100.0% 92.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.23e-01 100.0% 72.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.51e-01 98.2% 93.5%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 38.0 3.08e-01 72.7% 96.5%
3icaB00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 39.0 2.76e-01 78.2% 31.6%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 2.66e-01 96.4% 38.7%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 43.0 3.57e-01 98.2% 96.7%
8gzhC01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.55 38.0 2.72e-01 90.9% 22.7%
3gjyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 46.0 2.95e-01 96.4% 38.4%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.54 42.0 2.92e-01 89.1% 81.1%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.51e-01 98.2% 97.6%
3e82E02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 41.0 2.93e-01 87.3% 67.5%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 2.89e-01 89.1% 30.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.19e-01 96.4% 47.0%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.76e-01 98.2% 96.8%
2wtzA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 41.0 2.81e-01 90.9% 85.9%
1qhoA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.22e-01 87.3% 88.0%
2dgyA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.70e-01 94.5% 87.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3524527 220.1.1.33 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.71 57.0 4.56e-01 89.1% 87.3%
3260945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 6.03e-01 100.0% 95.0%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.70 52.0 4.84e-01 81.8% 74.3%
4435672 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.70 54.0 5.16e-01 85.5% 73.8%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 51.0 4.83e-01 81.8% 75.0%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 52.0 4.99e-01 100.0% 72.3%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.36e-01 83.6% 100.0%
3243188 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 58.0 5.25e-01 100.0% 81.3%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.41e-01 100.0% 86.7%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.02e-01 100.0% 75.7%
3484007 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.32e-01 100.0% 78.6%
3898952 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.17e-01 100.0% 73.3%
3406663 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.65 52.0 5.45e-01 90.9% 100.0%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 57.0 5.57e-01 100.0% 91.7%
3531894 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 57.0 5.41e-01 100.0% 93.8%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 57.0 5.13e-01 100.0% 73.3%
4944443 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.64 49.0 3.73e-01 89.1% 67.3%
3702281 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.64 48.0 4.86e-01 87.3% 81.8%
3843554 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 56.0 5.23e-01 100.0% 78.6%
3616007 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.64 49.0 4.93e-01 98.2% 85.5%
3931369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 51.0 5.32e-01 92.7% 98.0%
3653284 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 49.0 4.05e-01 87.3% 86.7%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 4.81e-01 100.0% 64.7%
3725260 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 55.0 5.11e-01 100.0% 78.6%
3486496 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.76e-01 98.2% 85.5%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.63 55.0 5.10e-01 100.0% 80.0%
3498860 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 51.0 3.15e-01 90.9% 24.6%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 50.0 4.59e-01 100.0% 68.0%
4680114 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 54.0 4.89e-01 100.0% 73.3%
167222 391.1.1.1 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.62 35.0 3.44e-01 72.7% 47.5%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 54.0 4.87e-01 100.0% 73.3%
2849853 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 52.0 4.97e-01 100.0% 85.1%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.61 50.0 4.75e-01 100.0% 79.4%
3679149 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 46.0 3.46e-01 83.6% 57.6%
3805791 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.60 43.0 2.76e-01 78.2% 28.6%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 4.79e-01 98.2% 77.1%
4864605 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 44.0 4.46e-01 81.8% 94.6%
5011793 2003.1.3.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_binding_3 0.60 47.0 3.36e-01 94.5% 58.5%
4057615 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 48.0 3.06e-01 96.4% 42.6%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.55e-01 100.0% 77.9%
3584571 4.1.1.56 ↗ beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.58 44.0 2.95e-01 100.0% 20.0%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.58 45.0 4.55e-01 100.0% 89.1%
3518786 509.1.1.1 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.58 47.0 3.78e-01 89.1% 60.0%
4965528 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.57 45.0 3.12e-01 94.5% 41.8%
3562793 330.1.1.12 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LIX1 0.56 45.0 3.40e-01 89.1% 48.9%
4130134 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.56 44.0 3.43e-01 92.7% 63.6%
3937333 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 3.96e-01 100.0% 62.5%
3673266 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 44.0 3.93e-01 96.4% 85.9%
3265716 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 42.0 3.62e-01 87.3% 76.7%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 44.0 4.23e-01 98.2% 89.2%
4027119 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 36.0 2.79e-01 70.9% 91.1%