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JF937090.1__AEK08292.1__PBI_BAKA_240__00239
Bact-VirJF937090.1__AEK08292.1__PBI_BAKA_240__00239
Identity
- Accession:
- JF937090 ↗
- Kingdom:
- phage
Quality
75.4
mean pLDDT
Taxonomy
TaxID: 2902882
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-38
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24253.2 best | DUF7454 | 62.2 | 4.90e-17 | 100.0% | 69.0% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x5jQ01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 51.0 | 3.35e-01 | 81.6% | 43.0% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.68 | 49.0 | 2.94e-01 | 81.6% | 16.8% |
| 4khbD02 | 2.30.29.220 | Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) | 0.67 | 49.0 | 3.94e-01 | 81.6% | 81.5% |
| 2w18A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.66 | 47.0 | 2.80e-01 | 78.9% | 12.7% |
| 7bexA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 49.0 | 3.28e-01 | 81.6% | 44.9% |
| 5jy6B01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 47.0 | 3.11e-01 | 81.6% | 42.0% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 46.0 | 3.91e-01 | 81.6% | 49.3% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.62 | 44.0 | 3.12e-01 | 73.7% | 25.4% |
| 2c1iA02 | 3.90.640.30 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.61 | 47.0 | 3.80e-01 | 86.8% | 53.2% |
| 6lcuA01 | 3.30.1590.10 | Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 | 0.60 | 47.0 | 3.57e-01 | 94.7% | 67.6% |
| 2xp1A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 41.0 | 3.10e-01 | 78.9% | 40.0% |
| 3bjnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 39.0 | 2.76e-01 | 81.6% | 78.4% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.56 | 41.0 | 3.16e-01 | 89.5% | 92.7% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 40.0 | 2.53e-01 | 81.6% | 38.7% |
| 2p62A01 | 3.40.50.10620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PH0156-like domains | 0.55 | 41.0 | 2.83e-01 | 81.6% | 85.8% |
| 1pvdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.54 | 40.0 | 2.94e-01 | 100.0% | 89.6% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 42.0 | 3.71e-01 | 94.7% | 82.0% |
| 3lk7A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.52 | 38.0 | 2.53e-01 | 89.5% | 76.2% |
| 3dc4A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.50 | 40.0 | 2.45e-01 | 97.4% | 90.4% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.50 | 36.0 | 3.03e-01 | 73.7% | 41.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5005811 | 3414.1.1.0 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein | 0.75 | 54.0 | 4.26e-01 | 78.9% | 92.5% |
| 160394 | 7538.1.1.1 ↗ | a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 | 0.74 | 53.0 | 3.73e-01 | 84.2% | 23.8% |
| 3591883 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.71 | 50.0 | 2.96e-01 | 76.3% | 12.4% |
| 4047281 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.66 | 54.0 | 4.04e-01 | 97.4% | 46.7% |
| 4871069 | 11.40.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly | 0.66 | 45.0 | 3.77e-01 | 71.1% | 75.4% |
| 4196058 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.66 | 46.0 | 3.19e-01 | 73.7% | 44.4% |
| 5030137 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.65 | 49.0 | 3.23e-01 | 84.2% | 42.9% |
| 3737433 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.63 | 51.0 | 3.18e-01 | 97.4% | 42.4% |
| 4643222 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.63 | 47.0 | 3.02e-01 | 81.6% | 52.8% |
| 5022452 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.62 | 48.0 | 3.23e-01 | 100.0% | 44.0% |
| 4500040 | 833.1.1.1 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin-I3 | 0.61 | 43.0 | 2.86e-01 | 76.3% | 59.4% |
| 5015435 | 2003.6.1.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase | 0.59 | 46.0 | 2.87e-01 | 97.4% | 27.0% |
| 3967078 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.59 | 47.0 | 2.89e-01 | 100.0% | 12.8% |
| 4991044 | 324.1.1.0 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like | 0.59 | 42.0 | 3.35e-01 | 78.9% | 87.5% |
| 3937074 | 833.1.1.1 ↗ | a+b duplicates or obligate multimers › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin inhibitor-3 › Pepsin-I3 | 0.58 | 41.0 | 2.93e-01 | 78.9% | 58.2% |
| 3390093 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.56 | 43.0 | 3.43e-01 | 89.5% | 80.0% |
| 4594252 | 330.1.1.17 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm_Ferlin | 0.55 | 45.0 | 3.41e-01 | 97.4% | 79.0% |
| None | — | 0.54 | 41.0 | 2.48e-01 | 76.3% | 9.0% | |
| 4502453 | 2003.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Gp_dh_N | 0.54 | 44.0 | 2.98e-01 | 100.0% | 88.0% |
| 4532621 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.53 | 37.0 | 2.27e-01 | 100.0% | 9.7% |
| 3576596 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.52 | 39.0 | 3.28e-01 | 100.0% | 80.0% |
| 3932976 | 2484.5.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase | 0.51 | 36.0 | 2.91e-01 | 78.9% | 73.7% |
| 3595150 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 43.0 | 2.62e-01 | 100.0% | 86.0% |
| 4961483 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.50 | 39.0 | 2.56e-01 | 100.0% | 81.4% |