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JF937101.1__AEK09399.1__LITTLEE_14__00014

Bact-Vir

JF937101.1__AEK09399.1__LITTLEE_14__00014

Identity

Accession:
JF937101 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Omegavirus› Mycobacterium_phage_LittleE

TaxID: 2922212

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-116
PDB
Domain cluster: rep: ON970568.1__UVK59046.1__SEA_CEN1621_28__00028__D12-111
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14528.12 best LAGLIDADG_3 24.3 4.10e-05 79.2% 48.8%
D2 high residues 125-176
PDB
Domain cluster: rep: IMGVR_UViG_3300025326_000612-3300025326-Ga0209342_100263602__D92-144
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.79 49.0 3.08e-01 80.8% 13.8%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.67 50.0 2.93e-01 78.8% 18.7%
4chdA00 3.30.70.3510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 33.0 2.45e-01 76.9% 18.5%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.65 46.0 2.86e-01 75.0% 33.2%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 54.0 3.87e-01 90.4% 54.1%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 47.0 3.96e-01 82.7% 83.0%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 43.0 4.15e-01 73.1% 62.7%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 46.0 3.11e-01 78.8% 76.9%
2p3nA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.62 45.0 3.41e-01 80.8% 31.1%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 51.0 3.61e-01 90.4% 50.0%
6iknD01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 50.0 3.15e-01 90.4% 17.6%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.60 54.0 3.81e-01 96.2% 68.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.52e-01 88.5% 41.1%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.60 41.0 2.67e-01 73.1% 98.4%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.59 43.0 4.63e-01 82.7% 95.3%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.42e-01 96.2% 77.5%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.57 40.0 3.09e-01 92.3% 32.8%
1kmxA00 2.10.160.10 Mainly Beta › Ribbon › Vascular Endothelial Growth Factor-165, Heparin-binding Domain › Vascular endothelial growth factor, heparin-binding domain 0.57 34.0 3.41e-01 76.9% 54.5%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 37.0 3.39e-01 71.2% 47.4%
5dkaA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 37.0 3.12e-01 75.0% 38.5%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 43.0 3.07e-01 88.5% 73.5%
2xocA01 3.30.40.140 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.53 37.0 3.31e-01 73.1% 62.8%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 39.0 3.46e-01 88.5% 93.2%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.51 36.0 3.41e-01 88.5% 58.3%
5tdrA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 35.0 3.19e-01 71.2% 81.4%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927940 304.36.1.2 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › RVT_1 0.79 40.0 3.07e-01 78.8% 24.8%
3211179 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 49.0 4.27e-01 78.8% 49.4%
3623406 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.68 53.0 4.45e-01 88.5% 48.4%
3172862 4177.1.1.8 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.67 49.0 3.12e-01 78.8% 74.3%
3412402 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 47.0 3.76e-01 76.9% 34.8%
3788517 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.67 48.0 3.69e-01 78.8% 32.3%
3498231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 49.0 4.22e-01 86.5% 51.8%
3343337 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 48.0 4.16e-01 82.7% 51.8%
3636201 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 47.0 3.73e-01 80.8% 86.1%
3559289 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 47.0 4.08e-01 80.8% 87.1%
3826090 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.64 47.0 4.10e-01 82.7% 87.1%
3358136 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.64 45.0 4.00e-01 76.9% 51.2%
3466575 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.63 45.0 4.28e-01 78.8% 73.8%
3995951 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.63 47.0 4.06e-01 82.7% 51.8%
3430371 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.63 46.0 3.92e-01 82.7% 78.9%
3583761 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 43.0 4.40e-01 80.8% 79.2%
4503505 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.62 50.0 4.02e-01 98.1% 62.5%
3891438 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.62 44.0 3.75e-01 78.8% 90.5%
3233807 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 43.0 3.98e-01 75.0% 55.7%
3539687 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 47.0 4.11e-01 86.5% 89.4%
3744636 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.61 47.0 4.04e-01 86.5% 90.0%
3928741 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.61 45.0 3.88e-01 80.8% 49.4%
5071927 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 42.0 4.19e-01 75.0% 78.2%
3669337 376.1.2.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › zf-RING_11 0.61 46.0 4.29e-01 88.5% 65.7%
3226161 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 48.0 4.11e-01 88.5% 92.9%
3671431 376.1.1.40 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_11 0.60 44.0 4.58e-01 80.8% 88.9%
3259913 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 44.0 3.98e-01 80.8% 57.3%
3259718 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.60 46.0 3.78e-01 88.5% 73.3%
3924159 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 43.0 3.72e-01 80.8% 48.9%
3937568 376.1.1.37 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.59 42.0 3.70e-01 78.8% 52.9%
3728775 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 42.0 3.73e-01 80.8% 51.8%
3719758 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 43.0 4.11e-01 82.7% 67.7%
3176105 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.58 47.0 2.97e-01 90.4% 77.6%
3796017 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 38.0 3.50e-01 71.2% 48.0%
3901194 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 45.0 3.82e-01 88.5% 90.0%
3622713 376.1.1.78 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Zf_2nd_IFT121 0.56 38.0 3.25e-01 73.1% 41.1%
3233552 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 38.0 3.89e-01 71.2% 74.0%
3066048 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 40.0 3.44e-01 80.8% 45.1%
3655538 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.56 38.0 3.37e-01 73.1% 44.7%
3503755 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 39.0 3.79e-01 80.8% 67.8%
4967026 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.55 37.0 3.59e-01 73.1% 66.2%
5006819 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 40.0 3.26e-01 82.7% 43.2%
3735240 376.1.1.114 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING-like 0.54 38.0 3.67e-01 78.8% 66.7%
4945028 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 36.0 3.36e-01 75.0% 55.4%
3658440 386.1.1.26 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_6 0.52 39.0 3.84e-01 75.0% 81.8%
3468455 376.1.3.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › ADD_ATRX 0.52 35.0 3.68e-01 73.1% 97.5%
3643916 375.1.1.235 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ADD_ATRX 0.51 35.0 3.70e-01 73.1% 97.5%
3606495 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 35.0 3.34e-01 73.1% 64.1%
3211971 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.51 35.0 3.76e-01 76.9% 100.0%
3599075 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.51 33.0 3.32e-01 71.2% 63.6%
None — 0.51 35.0 3.42e-01 75.0% 65.0%