←Back to structures

JF937105.1__AEK10060.1__PBI_REY_172__00150

Bact-Vir

JF937105.1__AEK10060.1__PBI_REY_172__00150

Identity

Accession:
JF937105 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Reyvirus› Mycobacterium_phage_Rey

TaxID: 1034115

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-131
PDB
Domain cluster: rep: EU770222.1__ACF05145.1__PREDATOR_48__00048__D11-110
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 50.0 5.27e-01 99.0% 92.1%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 4.26e-01 79.4% 91.4%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 46.0 4.59e-01 97.1% 78.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 4.24e-01 77.5% 98.1%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.57 33.0 3.64e-01 85.3% 72.7%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 31.0 3.43e-01 83.3% 66.3%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.55 40.0 4.01e-01 74.5% 77.5%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 28.0 3.27e-01 98.0% 69.6%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 30.0 3.06e-01 94.1% 53.4%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.79e-01 81.4% 81.7%
2e1qC08 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 38.0 3.19e-01 75.5% 92.4%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.51 38.0 3.77e-01 77.5% 73.8%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 34.0 3.23e-01 100.0% 55.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 27.0 3.39e-01 81.4% 91.2%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.50 27.0 2.89e-01 77.5% 55.4%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939992 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 40.0 3.99e-01 85.3% 56.4%
3661582 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 38.0 4.16e-01 82.4% 70.6%
3333267 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.64 40.0 4.17e-01 86.3% 67.4%
3384215 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 41.0 4.76e-01 84.3% 98.6%
3825504 330.1.1.5 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.61 42.0 4.38e-01 88.2% 80.0%
3863194 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.60 46.0 4.25e-01 80.4% 86.2%
3211024 221.13.1.0 ↗ a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.60 44.0 4.39e-01 98.0% 74.3%
3789856 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 40.0 3.88e-01 89.2% 60.0%
4655745 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.60 40.0 4.07e-01 74.5% 69.0%
3537025 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 41.0 2.60e-01 71.6% 83.0%
4182070 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.59 45.0 4.23e-01 82.4% 88.5%
3712993 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 35.0 3.92e-01 96.1% 77.3%
3738775 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.59 44.0 4.06e-01 79.4% 85.9%
3816855 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 42.0 3.92e-01 72.5% 62.4%
1627398 2002.1.1.174 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.59 31.0 3.85e-01 98.0% 90.9%
3924083 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.58 46.0 3.87e-01 100.0% 50.6%
3508989 2484.1.1.230 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27073 0.57 47.0 4.08e-01 100.0% 58.1%
4612956 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.57 40.0 2.78e-01 100.0% 21.2%
3780866 2484.1.1.204 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27046, PF27073 0.57 47.0 2.95e-01 100.0% 18.0%
3214480 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 44.0 2.80e-01 100.0% 17.0%
3841343 2484.1.1.239 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.57 47.0 2.95e-01 100.0% 18.0%
4968521 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.56 30.0 3.18e-01 73.5% 57.3%
3939338 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 3.87e-01 100.0% 49.2%
3414096 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.56 39.0 3.65e-01 73.5% 93.1%
3566243 2484.1.1.239 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT, PF27046, PF27073 0.56 46.0 2.94e-01 100.0% 18.8%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.55 38.0 3.85e-01 78.4% 71.0%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.55 33.0 2.78e-01 86.3% 31.9%
11167 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.55 42.0 2.82e-01 83.3% 99.5%
4978172 2.1.1.111 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ssb-like_OB 0.54 39.0 4.02e-01 95.1% 80.0%
5030672 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 37.0 2.81e-01 72.5% 29.4%
4963523 7504.1.1.2 ↗ a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.52 41.0 3.46e-01 85.3% 63.5%
3396837 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 33.0 3.78e-01 100.0% 92.9%
3720499 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.52 39.0 3.51e-01 96.1% 57.2%
3926114 223.2.1.6 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.51 43.0 3.34e-01 93.1% 64.3%
3603237 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 38.0 3.85e-01 100.0% 76.2%
4990857 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 45.0 3.27e-01 100.0% 73.6%
3413200 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 40.0 2.64e-01 85.3% 85.7%
4383357 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 46.0 4.12e-01 100.0% 80.7%
3367257 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 45.0 4.05e-01 100.0% 79.3%
3776862 2484.1.1.50 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.50 42.0 2.69e-01 100.0% 19.2%
3472001 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 4.28e-01 99.0% 88.7%