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JF974287.1__AGH16066.1__VPKG_00029__00029
Bact-VirJF974287.1__AGH16066.1__VPKG_00029__00029
Identity
- Accession:
- JF974287 ↗
- Kingdom:
- phage
Quality
70.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-121
Domain cluster:
rep: MG592584.1__AUR95865.1__NVP1214O_16__00016__D6-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24085.2 best | DUF7370 | 83.6 | 2.10e-23 | 99.1% | 96.0% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.61 | 22.0 | 2.97e-01 | 83.6% | 59.0% |
| 1aisB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 45.0 | 4.86e-01 | 95.7% | 94.9% |
| 1u6zA03 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.57 | 50.0 | 4.65e-01 | 98.3% | 95.2% |
| 2hqcA01 | 1.20.1640.10 | Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain | 0.56 | 50.0 | 4.23e-01 | 100.0% | 75.7% |
| 1uyjA01 | 3.30.360.60 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.56 | 36.0 | 4.09e-01 | 89.7% | 89.0% |
| 1wmiA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.56 | 36.0 | 4.00e-01 | 87.9% | 85.2% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.54 | 35.0 | 3.82e-01 | 72.4% | 79.2% |
| 2fiwA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 41.0 | 3.70e-01 | 81.0% | 86.3% |
| 3r2cA00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.53 | 46.0 | 4.34e-01 | 95.7% | 87.7% |
| 3f2bA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 28.0 | 3.02e-01 | 92.2% | 60.4% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 43.0 | 4.12e-01 | 96.6% | 81.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4056379 | 223.1.1.130 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PF26961 | 0.70 | 37.0 | 3.99e-01 | 89.7% | 59.0% |
| 3243237 | 5001.1.1.33 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh | 0.63 | 49.0 | 3.62e-01 | 82.8% | 58.7% |
| 3925755 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.61 | 26.0 | 3.48e-01 | 87.1% | 75.0% |
| 4941415 | 1076.1.1.0 ↗ | alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related | 0.60 | 40.0 | 3.73e-01 | 75.9% | 52.7% |
| 3976621 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.56 | 44.0 | 4.51e-01 | 81.9% | 96.4% |
| 4975535 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.55 | 33.0 | 3.85e-01 | 99.1% | 86.3% |
| 2526314 | 1205.2.1.1 ↗ | a+b two layers › C-terminal domain of CdiA toxin › C-terminal domain of P. aeruginosa CdiA › C-terminal domain of P. aeruginosa CdiA › PF31217 | 0.54 | 38.0 | 4.14e-01 | 89.7% | 90.2% |
| 3839082 | 4312.1.1.20 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › DUF3519, PBECR1 | 0.54 | 42.0 | 4.07e-01 | 100.0% | 72.6% |
| 3281884 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.53 | 46.0 | 3.99e-01 | 96.6% | 73.2% |
| 3596133 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.53 | 32.0 | 3.40e-01 | 89.7% | 69.0% |
| 4985569 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.52 | 32.0 | 3.06e-01 | 97.4% | 49.6% |
| 3384992 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.51 | 31.0 | 2.96e-01 | 96.6% | 50.4% |
| 3253586 | 101.1.10.9 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin | 0.51 | 45.0 | 4.18e-01 | 99.1% | 89.0% |