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JF974295.1__AGH57507.1__PSYG_00046__00046

Bact-Vir

JF974295.1__AGH57507.1__PSYG_00046__00046

Identity

Accession:
JF974295 ↗
Kingdom:
phage

Quality

63.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-66
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.70 41.0 3.62e-01 72.7% 39.0%
2bm0A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.69 38.0 3.98e-01 90.9% 58.8%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.65 56.0 4.97e-01 98.2% 82.3%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.64 47.0 4.04e-01 80.0% 50.0%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 45.0 3.92e-01 100.0% 47.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 46.0 3.48e-01 78.2% 41.0%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 43.0 2.94e-01 74.5% 39.6%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 43.0 3.69e-01 85.5% 44.0%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 43.0 3.63e-01 90.9% 42.3%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.62 48.0 2.91e-01 87.3% 62.7%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.62 45.0 2.89e-01 78.2% 24.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 42.0 4.18e-01 85.5% 70.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 53.0 4.33e-01 100.0% 64.4%
3fdfA02 6.10.140.550 Special › Helix non-globular › Helix Hairpins › 0.61 37.0 3.72e-01 78.2% 58.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.94e-01 80.0% 68.7%
5xilA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 53.0 4.08e-01 100.0% 89.8%
1lmlA04 2.30.34.10 Mainly Beta › Roll › Leishmanolysin; domain 4 › Leishmanolysin domain 4 0.60 39.0 3.35e-01 100.0% 37.4%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 41.0 3.46e-01 87.3% 39.4%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.85e-01 83.6% 20.3%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 38.0 2.43e-01 83.6% 11.7%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.58 46.0 3.39e-01 98.2% 70.7%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 41.0 3.55e-01 78.2% 55.4%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 50.0 4.21e-01 96.4% 58.9%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.57 44.0 4.03e-01 85.5% 63.5%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.57 39.0 2.69e-01 70.9% 32.5%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.28e-01 80.0% 45.2%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 50.0 4.79e-01 96.4% 96.8%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.57 50.0 3.48e-01 100.0% 51.1%
1ykdB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 46.0 3.33e-01 100.0% 48.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 4.26e-01 89.1% 75.0%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.56 38.0 2.18e-01 72.7% 15.3%
1d2mA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.56 32.0 3.07e-01 85.5% 40.6%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 47.0 3.76e-01 100.0% 61.0%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 39.0 3.58e-01 78.2% 55.4%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.56 44.0 2.96e-01 92.7% 93.6%
3wxyA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 49.0 3.52e-01 98.2% 38.3%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 35.0 3.48e-01 80.0% 61.0%
1r75A00 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 41.0 3.37e-01 85.5% 70.0%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 40.0 3.92e-01 98.2% 77.4%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 47.0 3.45e-01 100.0% 39.9%
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 3.38e-01 100.0% 91.1%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.74e-01 90.9% 88.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 33.0 3.00e-01 74.5% 43.2%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 41.0 2.96e-01 100.0% 89.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 32.0 3.28e-01 72.7% 62.7%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.95e-01 81.8% 93.3%
1wi5A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.74e-01 96.4% 70.7%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 30.0 2.96e-01 78.2% 50.0%
3s6gA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 2.80e-01 87.3% 30.1%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3464671 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.79 47.0 4.34e-01 72.7% 47.1%
4991612 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 64.0 5.92e-01 100.0% 75.7%
4990252 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 62.0 5.72e-01 100.0% 74.3%
3645592 719.2.1.1 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.70 56.0 4.61e-01 89.1% 91.0%
4940485 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.69 62.0 4.73e-01 100.0% 58.4%
3516319 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.68 46.0 3.24e-01 70.9% 22.3%
3995179 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 43.0 4.69e-01 96.4% 80.0%
3275615 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 40.0 3.04e-01 70.9% 25.6%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.65 54.0 4.91e-01 100.0% 67.5%
4056471 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.65 44.0 3.91e-01 85.5% 48.8%
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.64 40.0 4.06e-01 70.9% 61.8%
4025894 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 37.0 2.94e-01 81.8% 28.4%
3177133 193.1.1.1 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.63 50.0 3.72e-01 89.1% 87.7%
4498285 245.2.1.1 a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.63 47.0 3.83e-01 80.0% 45.3%
3973152 5.1.5.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Cytochrom_D1 0.63 48.0 2.86e-01 83.6% 16.5%
3598462 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.53e-01 78.2% 52.8%
3740262 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.44e-01 78.2% 53.8%
3215090 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 50.0 4.81e-01 96.4% 78.5%
3814126 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.61 42.0 3.68e-01 70.9% 49.4%
4026211 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.60 48.0 4.98e-01 90.9% 94.0%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 47.0 4.74e-01 85.5% 87.3%
5028546 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 39.0 3.64e-01 98.2% 54.3%
3600149 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.59 42.0 3.42e-01 74.5% 45.0%
3585029 3735.1.1.14 beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.59 48.0 2.64e-01 92.7% 67.9%
3927286 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 49.0 4.54e-01 100.0% 89.3%
3348336 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.58 44.0 2.90e-01 90.9% 19.3%
3346721 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.57 45.0 3.65e-01 100.0% 72.3%
3402542 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.57 39.0 3.52e-01 70.9% 52.0%
4105328 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.56 37.0 3.52e-01 70.9% 56.9%
3251763 4161.1.1.0 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.56 47.0 2.91e-01 92.7% 18.8%
1877308 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.56 45.0 3.99e-01 90.9% 89.2%
3594044 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 47.0 3.35e-01 96.4% 75.4%
3579675 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 3.70e-01 98.2% 93.3%
2502895 2.27.1.0 beta barrels › OB-fold 0.56 40.0 3.65e-01 89.1% 54.5%
3268906 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.55 41.0 3.50e-01 80.0% 66.3%
4289812 327.11.2.13 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PNO1_2nd 0.55 44.0 4.00e-01 92.7% 71.2%
3599155 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 3.27e-01 100.0% 42.8%
3949260 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.55 43.0 3.36e-01 100.0% 41.8%
3384455 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.54 43.0 2.99e-01 85.5% 37.8%
3317030 4.1.1.366 beta barrels › SH3 › SH3 › SH3 › PF26738 0.54 34.0 3.33e-01 70.9% 53.3%
4863926 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.54 39.0 4.01e-01 100.0% 87.0%
3734383 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.54 46.0 2.82e-01 100.0% 37.3%
3537417 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 32.0 3.39e-01 70.9% 66.7%
5035011 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.52 43.0 2.87e-01 92.7% 77.0%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 32.0 3.07e-01 72.7% 47.1%
4141047 593.1.1.0 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.52 44.0 2.91e-01 100.0% 38.5%
3304389 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 2.59e-01 87.3% 20.3%
3174487 2498.5.1.0 mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.52 44.0 2.74e-01 100.0% 28.2%
4381621 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.52 46.0 3.14e-01 100.0% 28.2%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.52 33.0 3.36e-01 78.2% 61.8%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.52 33.0 2.88e-01 70.9% 37.6%
3866505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 34.0 3.41e-01 72.7% 60.0%
3689915 109.4.1.1227 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NPHP3_N 0.51 44.0 2.51e-01 100.0% 32.7%
4994522 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 33.0 2.46e-01 89.1% 21.9%
3714703 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 44.0 3.63e-01 98.2% 100.0%
3239820 3289.1.1.14 alpha complex topology › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › Nck-associated protein 1/Cytoplasmic FMR1-interacting protein 1 › WASH-7_mid, WASH-7_C 0.50 38.0 2.11e-01 87.3% 17.0%