←Back to structures
JF974295.1__AGH57509.1__PSYG_00048__00048
Bact-VirJF974295.1__AGH57509.1__PSYG_00048__00048
Identity
- Accession:
- JF974295 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 20-89
Domain cluster:
rep: OP172633.1__WAX05116.1__AB434P2_00043__00038__D17-94
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.69 | 52.0 | 4.76e-01 | 100.0% | 61.1% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.65 | 57.0 | 5.70e-01 | 100.0% | 93.1% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.64 | 36.0 | 4.13e-01 | 91.4% | 76.5% |
| 8bveA03 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.63 | 55.0 | 5.51e-01 | 98.6% | 100.0% |
| 3mcaA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 49.0 | 4.35e-01 | 100.0% | 58.8% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.62 | 57.0 | 5.49e-01 | 100.0% | 90.9% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.59 | 51.0 | 4.26e-01 | 100.0% | 55.3% |
| 3kbgA03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 24.0 | 2.70e-01 | 100.0% | 37.5% |
| 3j7yD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 35.0 | 3.34e-01 | 88.6% | 59.3% |
| 2do3A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 30.0 | 3.43e-01 | 90.0% | 78.4% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 3.62e-01 | 98.6% | 59.6% |
| 5dnoA00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.51 | 44.0 | 3.36e-01 | 100.0% | 40.9% |
| 2aefA03 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.51 | 39.0 | 3.83e-01 | 100.0% | 75.9% |
| 3b5mA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 44.0 | 3.74e-01 | 100.0% | 68.9% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.50 | 39.0 | 3.49e-01 | 98.6% | 58.7% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.80 | 57.0 | 6.35e-01 | 97.1% | 94.5% |
| 5022524 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 59.0 | 5.93e-01 | 100.0% | 78.6% |
| 5083816 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 62.0 | 6.22e-01 | 100.0% | 92.9% |
| 5005052 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.71 | 51.0 | 5.63e-01 | 100.0% | 94.5% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.71 | 63.0 | 6.22e-01 | 98.6% | 94.7% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.68 | 41.0 | 4.09e-01 | 97.1% | 57.3% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.67 | 51.0 | 4.46e-01 | 100.0% | 53.2% |
| 2526359 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.65 | 49.0 | 5.16e-01 | 100.0% | 93.3% |
| 3513462 | 70.4.1.8 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement | 0.65 | 50.0 | 5.28e-01 | 100.0% | 96.7% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.65 | 57.0 | 5.79e-01 | 100.0% | 97.1% |
| 3945811 | 70.4.1.7 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid | 0.64 | 48.0 | 5.12e-01 | 97.1% | 95.0% |
| 4953517 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 56.0 | 5.51e-01 | 100.0% | 93.2% |
| 4935036 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 56.0 | 5.58e-01 | 100.0% | 94.5% |
| 5012061 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.62 | 54.0 | 5.47e-01 | 97.1% | 95.7% |
| 1176847 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.62 | 56.0 | 5.49e-01 | 100.0% | 90.9% |
| 3786547 | 1.1.8.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C | 0.58 | 47.0 | 4.15e-01 | 100.0% | 61.0% |
| 3779830 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.58 | 36.0 | 3.27e-01 | 85.7% | 48.9% |
| 3556601 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.57 | 37.0 | 3.82e-01 | 88.6% | 70.8% |
| 4650162 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 32.0 | 3.36e-01 | 100.0% | 58.5% |
| 4055111 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.57 | 39.0 | 3.19e-01 | 85.7% | 40.0% |
| 4981188 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.56 | 39.0 | 3.70e-01 | 100.0% | 61.2% |
| 4550532 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.54 | 32.0 | 2.97e-01 | 100.0% | 45.6% |
| 4050976 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.54 | 48.0 | 4.75e-01 | 100.0% | 96.0% |
| 3756559 | 11.1.4.74 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › FAM171A1-2-B_N | 0.53 | 37.0 | 2.54e-01 | 100.0% | 20.0% |
| 5036886 | 1.1.13.74 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › UPF0179 | 0.53 | 48.0 | 4.68e-01 | 100.0% | 96.0% |
| 4548340 | 1.1.9.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › UPF0179 | 0.51 | 44.0 | 4.49e-01 | 95.7% | 100.0% |
| 1263580 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.51 | 31.0 | 3.12e-01 | 91.4% | 58.7% |
D2
high
residues 93-148
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 40.0 | 3.81e-01 | 87.5% | 56.1% |
| 2npiA03 | 2.40.30.330 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain | 0.56 | 48.0 | 4.01e-01 | 100.0% | 77.7% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.42e-01 | 89.3% | 66.1% |
| 2dnlA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 38.0 | 3.38e-01 | 100.0% | 55.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.68 | 55.0 | 5.65e-01 | 94.6% | 98.1% |
| 3274752 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 41.0 | 3.60e-01 | 100.0% | 47.1% |
| 3242100 | 376.1.5.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger | 0.53 | 45.0 | 4.57e-01 | 100.0% | 98.2% |
| 4603703 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 39.0 | 2.95e-01 | 89.3% | 83.7% |
| 4569088 | 12.5.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related | 0.51 | 38.0 | 2.78e-01 | 100.0% | 26.7% |