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JF974295.1__AGH57511.1__PSYG_00050__00050
Bact-VirJF974295.1__AGH57511.1__PSYG_00050__00050
Identity
- Accession:
- JF974295 ↗
- Kingdom:
- phage
Quality
81.9
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-57
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.72 | 52.0 | 3.25e-01 | 100.0% | 13.8% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.58 | 49.0 | 3.57e-01 | 100.0% | 42.6% |
| 1yfbA00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.58 | 26.0 | 2.73e-01 | 80.4% | 38.5% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.57 | 46.0 | 3.40e-01 | 89.3% | 96.0% |
| 5yl6A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.57 | 50.0 | 3.52e-01 | 100.0% | 41.5% |
| 1w6kA01 | 6.20.120.20 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 29.0 | 3.07e-01 | 83.9% | 46.0% |
| 2ww8A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.68e-01 | 96.4% | 93.5% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 41.0 | 3.07e-01 | 85.7% | 54.5% |
| 2b0uD02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.54 | 31.0 | 2.90e-01 | 100.0% | 38.9% |
| 1o5wA02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.53 | 39.0 | 2.63e-01 | 85.7% | 45.1% |
| 6whcA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.86e-01 | 91.1% | 70.8% |
| 2yx1A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 38.0 | 2.78e-01 | 82.1% | 45.6% |
| 3h5aD01 | 3.90.930.70 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.52 | 44.0 | 3.87e-01 | 100.0% | 90.9% |
| 1g8mA02 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.52 | 39.0 | 2.87e-01 | 87.5% | 46.6% |
| 4k6eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 40.0 | 3.11e-01 | 92.9% | 90.3% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 37.0 | 3.31e-01 | 89.3% | 70.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964224 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 62.0 | 6.49e-01 | 100.0% | 96.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.75 | 54.0 | 5.85e-01 | 98.2% | 95.6% |
| 1346119 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.74 | 53.0 | 5.54e-01 | 100.0% | 86.3% |
| 5010676 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.72 | 52.0 | 5.40e-01 | 100.0% | 88.0% |
| 3742088 | 4076.3.1.3 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C | 0.71 | 53.0 | 5.40e-01 | 100.0% | 87.0% |
| 4939553 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 49.0 | 5.14e-01 | 100.0% | 86.0% |
| 4593896 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 48.0 | 5.08e-01 | 96.4% | 91.1% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 49.0 | 5.22e-01 | 96.4% | 95.6% |
| 4939413 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 52.0 | 5.46e-01 | 98.2% | 96.0% |
| 4976498 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.66 | 52.0 | 5.17e-01 | 100.0% | 83.3% |
| 1270868 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.63 | 48.0 | 3.14e-01 | 85.7% | 41.1% |
| 259870 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.63 | 48.0 | 3.15e-01 | 85.7% | 42.3% |
| 3957223 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.62 | 47.0 | 2.81e-01 | 83.9% | 26.4% |
| 2321115 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 44.0 | 2.88e-01 | 82.1% | 41.0% |
| 3880336 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.56 | 38.0 | 2.42e-01 | 71.4% | 96.4% |
| 5029930 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 40.0 | 3.41e-01 | 80.4% | 88.0% |
| 3327661 | 2007.1.4.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK | 0.54 | 43.0 | 2.76e-01 | 92.9% | 46.4% |
| 4979651 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 38.0 | 3.32e-01 | 75.0% | 66.7% |
| 4993186 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.53 | 42.0 | 3.68e-01 | 100.0% | 97.1% |
| 5075002 | 101.1.2.525 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7646 | 0.53 | 36.0 | 3.16e-01 | 73.2% | 63.2% |
| 3214149 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.53 | 43.0 | 4.20e-01 | 98.2% | 81.5% |
| 3352831 | 109.4.1.1254 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif | 0.53 | 38.0 | 2.29e-01 | 76.8% | 13.9% |
| 3420078 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.53 | 40.0 | 2.30e-01 | 85.7% | 11.9% |
| 3285595 | 7523.1.1.23 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 | 0.52 | 39.0 | 3.03e-01 | 89.3% | 68.8% |
| 3516335 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.52 | 41.0 | 4.25e-01 | 92.9% | 92.5% |
| 3378291 | 109.4.1.2216 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif | 0.52 | 37.0 | 2.17e-01 | 76.8% | 9.7% |
| 3515728 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.52 | 42.0 | 2.40e-01 | 92.9% | 19.5% |
| 3958083 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.52 | 42.0 | 2.67e-01 | 100.0% | 21.7% |
| 3596174 | 3075.1.1.0 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA | 0.51 | 39.0 | 3.67e-01 | 83.9% | 78.6% |
| 4997639 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 2.85e-01 | 80.4% | 37.1% |
| 4011862 | 7516.1.1.82 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Chitin_synth_2 | 0.51 | 44.0 | 2.59e-01 | 100.0% | 25.0% |
| 3576239 | 110.3.1.1 ↗ | alpha arrays › DEATH domain › SLED domain › SLED domain › SLED | 0.51 | 43.0 | 3.50e-01 | 100.0% | 94.8% |
| None | — | 0.50 | 43.0 | 2.64e-01 | 100.0% | 30.2% | |
| 5012126 | 2003.1.5.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Met_10 | 0.50 | 36.0 | 2.52e-01 | 80.4% | 35.7% |
| 4939058 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.50 | 38.0 | 2.56e-01 | 100.0% | 19.6% |