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JF974299.2__AET72793.1__SXFG_00245__00186

Bact-Vir

JF974299.2__AET72793.1__SXFG_00245__00186

Identity

Accession:
JF974299 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Neritesvirus› Synechococcus_phage_S-CAM8

TaxID: 754038

Cluster

View cluster (38 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-129
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 37.5 3.80e-09 97.9% 98.0%
PF13455.13 MUG113 35.4 1.80e-08 75.3% 97.3%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.72 54.0 5.55e-01 78.4% 97.8%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.66 43.0 3.84e-01 100.0% 47.1%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.63 41.0 4.79e-01 85.6% 97.0%
2dayA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 40.0 3.87e-01 100.0% 55.8%
5zneA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 38.0 4.27e-01 83.5% 86.3%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 35.0 3.36e-01 99.0% 53.7%
7w01A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 3.02e-01 95.9% 30.7%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.27e-01 91.8% 88.7%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 32.0 3.75e-01 94.8% 82.1%
3ifrA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 34.0 2.55e-01 100.0% 25.2%
5jszA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 37.0 2.72e-01 86.6% 25.0%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 23.0 2.98e-01 82.5% 74.5%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 37.0 3.45e-01 100.0% 59.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3613416 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.82 75.0 6.93e-01 100.0% 79.2%
3597677 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.81 74.0 7.20e-01 100.0% 90.5%
3740549 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.77 70.0 6.08e-01 100.0% 81.1%
3197583 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.77 71.0 5.56e-01 100.0% 79.3%
3989300 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.76 71.0 6.76e-01 100.0% 94.5%
3698242 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.75 69.0 6.31e-01 100.0% 78.0%
4028705 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 42.0 3.92e-01 100.0% 54.2%
3626566 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.63 42.0 3.99e-01 100.0% 56.5%
3552620 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.62 40.0 3.80e-01 99.0% 53.3%
3516954 3105.1.1.0 ↗ a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related 0.61 43.0 3.61e-01 100.0% 43.6%
3671172 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.57 39.0 3.62e-01 99.0% 54.4%
3737742 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 40.0 3.93e-01 99.0% 67.9%
4517262 4943.1.1.1 ↗ a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL 0.54 40.0 4.23e-01 81.4% 88.2%
3723442 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 43.0 3.95e-01 91.8% 90.8%
3737809 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 36.0 3.87e-01 99.0% 83.5%
3742201 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 43.0 3.87e-01 91.8% 86.7%
5076775 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 47.0 4.23e-01 100.0% 99.2%
None — 0.51 45.0 3.32e-01 100.0% 55.1%
5048519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 47.0 4.21e-01 100.0% 98.5%
4033265 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.51 35.0 2.68e-01 87.6% 29.4%
3265857 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.50 37.0 3.58e-01 77.3% 80.9%