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AGF91191.1

Arc-Vir

JF974305__AGF91191.1__HAPG-00005__00005

Identity

Accession:
JF974305 ↗
Protein ID:
AGF91191.1 ↗
Kingdom:
archaea

Quality

82.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Halorubrum_phage_GNf2

TaxID: 889959

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-88
PDB
Domain cluster: rep: NC_009813.1__YP_001468711.1__LiPB054_gp07__00007__D21-87
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.75 57.0 5.41e-01 92.7% 69.9%
6ethA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.62 49.0 4.80e-01 85.4% 91.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 4.18e-01 90.2% 66.3%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 41.0 4.19e-01 91.5% 70.7%
3gqhA01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.61 51.0 4.42e-01 96.3% 60.2%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 44.0 4.11e-01 92.7% 62.4%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 42.0 4.08e-01 91.5% 65.6%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 42.0 3.89e-01 89.0% 59.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 42.0 4.04e-01 92.7% 69.1%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 3.84e-01 92.7% 64.9%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 41.0 3.84e-01 91.5% 64.4%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 40.0 3.83e-01 95.1% 64.0%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 42.0 3.83e-01 90.2% 62.0%
3p26A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 43.0 3.98e-01 89.0% 65.5%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 32.0 3.30e-01 81.7% 65.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3602933 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.80 60.0 6.71e-01 91.5% 98.5%
5083816 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 63.0 6.82e-01 90.2% 100.0%
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.78 53.0 6.26e-01 92.7% 98.3%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 39.0 4.29e-01 89.0% 66.2%
5002645 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.71 49.0 5.64e-01 86.6% 100.0%
5029405 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 31.0 3.74e-01 78.0% 65.5%
3945811 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.66 46.0 5.20e-01 90.2% 100.0%
3490658 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.65 53.0 5.08e-01 89.0% 94.7%
3398750 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.64 52.0 5.27e-01 86.6% 97.5%
1176867 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.63 54.0 5.28e-01 93.9% 91.2%
4027927 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.62 43.0 4.18e-01 92.7% 63.2%
5035413 1.1.7.34 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4 0.61 43.0 3.74e-01 91.5% 46.9%
143 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 42.0 4.05e-01 91.5% 64.1%
3289382 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 41.0 3.86e-01 91.5% 56.2%
4514773 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 41.0 3.89e-01 91.5% 59.0%
3268226 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 42.0 3.93e-01 91.5% 58.1%
3556029 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.60 43.0 3.68e-01 90.2% 47.7%
4438537 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.60 41.0 4.04e-01 91.5% 65.6%
3455361 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 42.0 3.96e-01 92.7% 59.0%
4397998 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.59 42.0 3.57e-01 91.5% 45.2%
5058285 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.59 41.0 4.00e-01 91.5% 65.6%
4037780 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.57 41.0 3.36e-01 90.2% 40.0%
3482997 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.57 42.0 3.40e-01 90.2% 40.0%
4165709 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.56 41.0 3.86e-01 91.5% 61.9%
4023922 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.56 34.0 2.83e-01 80.5% 35.7%
3609428 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.55 43.0 3.68e-01 91.5% 51.9%
2723599 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 42.0 3.73e-01 92.7% 60.7%
3481909 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 44.0 3.49e-01 96.3% 73.1%
3593214 4052.1.1.0 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like 0.51 39.0 3.99e-01 87.8% 86.3%
D2 high residues 90-179
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 32.0 3.57e-01 93.3% 75.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 35.0 3.82e-01 93.3% 78.7%
3670892 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.51 28.0 2.87e-01 97.8% 52.2%
3686775 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.50 41.0 4.18e-01 100.0% 94.1%