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AGF91194.1

Arc-Vir

JF974305__AGF91194.1__HAPG-00008__00008

Identity

Accession:
JF974305 ↗
Protein ID:
AGF91194.1 ↗
Kingdom:
archaea

Quality

82.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Halorubrum_phage_GNf2

TaxID: 889959

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-119
PDB
Domain cluster: rep: IMGVR_UViG_3300002182_000438-3300002182-JGI24721J26819_100247404__D6-109
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jvoA00 1.10.3230.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein 0.73 57.0 6.04e-01 100.0% 92.7%
3psfA02 1.10.10.650 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RuvA domain 2-like 0.67 43.0 3.94e-01 82.6% 49.3%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 41.0 4.34e-01 96.3% 80.0%
3d2fA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 36.0 3.96e-01 86.2% 75.0%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 37.0 3.85e-01 74.3% 65.7%
4jneA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.60 37.0 4.06e-01 86.2% 76.1%
2fefA01 1.20.1440.70 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › PA2201 N-terminal domain-like 0.60 41.0 3.97e-01 71.6% 62.4%
7lvlA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.59 43.0 3.22e-01 77.1% 54.2%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 37.0 4.16e-01 93.6% 83.1%
6dewA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 41.0 3.42e-01 81.7% 41.6%
2b5dX02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.57 37.0 3.69e-01 71.6% 62.3%
2iu5B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 41.0 3.49e-01 85.3% 45.8%
1ungE00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 40.0 3.70e-01 96.3% 57.1%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 42.0 4.21e-01 98.2% 79.5%
6oh6A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 50.0 3.58e-01 100.0% 54.0%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 36.0 3.03e-01 100.0% 40.3%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 46.0 3.93e-01 99.1% 63.8%
3n2oA03 1.20.58.930 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 32.0 3.46e-01 91.7% 69.8%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 42.0 3.89e-01 88.1% 88.7%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 46.0 3.40e-01 100.0% 75.3%
8b70A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.51 45.0 3.04e-01 99.1% 90.9%
6b4rA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 40.0 3.04e-01 86.2% 70.6%
7d3uC01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 37.0 3.79e-01 78.0% 79.4%
2d2mD00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.50 42.0 3.86e-01 92.7% 93.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3622960 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 43.0 4.06e-01 71.6% 57.7%
3242789 633.23.1.14 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 0.64 45.0 3.93e-01 72.5% 60.0%
4527444 5065.1.1.2 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.63 44.0 3.16e-01 72.5% 98.2%
3693018 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 42.0 3.81e-01 85.3% 50.7%
3635258 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 43.0 4.26e-01 71.6% 79.1%
3821755 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.61 39.0 3.42e-01 74.3% 43.1%
3602339 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.57 40.0 3.46e-01 72.5% 48.8%
3393646 102.1.3.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain 0.55 48.0 4.72e-01 97.2% 87.5%
3173321 7073.1.1.1 ↗ alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M 0.55 47.0 4.50e-01 94.5% 79.8%
4877500 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 40.0 4.13e-01 77.1% 80.6%
4599664 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.54 47.0 3.74e-01 93.6% 57.1%
3909404 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 41.0 4.20e-01 96.3% 84.8%
4129371 1037.1.1.1 ↗ alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.54 49.0 3.59e-01 100.0% 47.5%
3734743 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.53 38.0 2.91e-01 75.2% 66.0%
3989681 304.20.1.5 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › tRNA_synt_2f 0.53 46.0 3.71e-01 99.1% 69.3%
3285252 601.33.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.53 38.0 3.32e-01 89.0% 51.6%
3581305 604.12.1.92 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Meckelin 0.52 42.0 3.38e-01 84.4% 53.7%
3601904 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.52 46.0 4.31e-01 100.0% 86.7%
3241820 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.51 37.0 2.75e-01 73.4% 43.5%
3280494 191.1.1.15 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.51 40.0 3.89e-01 89.9% 74.4%
3701892 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.50 43.0 3.88e-01 100.0% 88.5%