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AGF91220.1
Arc-VirJF974305__AGF91220.1__HAPG-00034__00034
Identity
- Accession:
- JF974305 ↗
- Protein ID:
- AGF91220.1 ↗
- Kingdom:
- archaea
Quality
78.9
mean pLDDT
Taxonomy
TaxID: 889959
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-51
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.39e-01 | 97.7% | 59.6% |
| 3kvpA00 | 6.20.140.10 | Special › Other non-globular › Immunoglobulin-like › | 0.62 | 37.0 | 3.78e-01 | 74.4% | 55.8% |
| 2pm9A02 | 2.20.25.400 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 38.0 | 4.08e-01 | 72.1% | 83.3% |
| 1dkiC01 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.61 | 48.0 | 3.13e-01 | 97.7% | 19.6% |
| 8dqwG01 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.60 | 47.0 | 3.32e-01 | 100.0% | 93.1% |
| 1x3zA04 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 48.0 | 4.61e-01 | 97.7% | 87.0% |
| 2eobA01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 40.0 | 3.06e-01 | 79.1% | 26.5% |
| 1efpB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 39.0 | 2.47e-01 | 76.7% | 11.8% |
| 2z0qA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 43.0 | 3.26e-01 | 97.7% | 29.7% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 43.0 | 3.15e-01 | 86.0% | 28.1% |
| 1dn0D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 3.71e-01 | 95.3% | 94.7% |
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.57 | 40.0 | 2.60e-01 | 79.1% | 14.0% |
| 2h8gA00 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.57 | 47.0 | 3.04e-01 | 100.0% | 21.1% |
| 1b7tA02 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.57 | 41.0 | 3.96e-01 | 97.7% | 69.2% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.56 | 38.0 | 2.95e-01 | 72.1% | 84.6% |
| 2eczA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 42.0 | 3.69e-01 | 100.0% | 52.9% |
| 1twuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 45.0 | 3.32e-01 | 100.0% | 83.9% |
| 3f3fD01 | 2.20.25.500 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 45.0 | 4.33e-01 | 97.7% | 84.3% |
| 1wydA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 44.0 | 3.51e-01 | 100.0% | 44.1% |
| 2fyfA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 40.0 | 3.06e-01 | 79.1% | 54.3% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.67e-01 | 97.7% | 59.1% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 42.0 | 3.17e-01 | 100.0% | 89.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.54 | 37.0 | 3.39e-01 | 90.7% | 50.7% |
| 3zleA03 | 2.10.70.70 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 37.0 | 3.85e-01 | 83.7% | 82.1% |
| 4huzA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 47.0 | 3.24e-01 | 100.0% | 33.8% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 42.0 | 3.22e-01 | 100.0% | 88.8% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 39.0 | 2.94e-01 | 88.4% | 63.0% |
| 2zyqA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 42.0 | 3.19e-01 | 100.0% | 43.2% |
| 2e6zA00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.41e-01 | 88.4% | 54.2% |
| 1kw3B01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 41.0 | 3.12e-01 | 100.0% | 43.2% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.06e-01 | 100.0% | 85.2% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 40.0 | 3.92e-01 | 90.7% | 85.4% |
| 2qlvB02 | 2.20.25.290 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 35.0 | 3.59e-01 | 72.1% | 81.6% |
| 2nvmA00 | 3.30.310.110 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like | 0.51 | 35.0 | 2.81e-01 | 76.7% | 31.7% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 35.0 | 2.77e-01 | 83.7% | 31.0% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 41.0 | 2.97e-01 | 100.0% | 65.5% |
| 5uv6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.10e-01 | 88.4% | 77.2% |
| 2ehzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.50 | 41.0 | 3.04e-01 | 100.0% | 42.2% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3991587 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 52.0 | 5.33e-01 | 90.7% | 77.5% |
| 3610331 | 330.13.1.0 ↗ | a+b two layers › dsRBD-like › dGTP triphosphohydrolase inhibitor › dGTP triphosphohydrolase inhibitor | 0.72 | 54.0 | 4.56e-01 | 83.7% | 56.0% |
| 3941004 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 50.0 | 4.14e-01 | 90.7% | 41.2% |
| 3560459 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.70 | 51.0 | 5.07e-01 | 79.1% | 75.6% |
| 3862816 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.70 | 51.0 | 4.52e-01 | 79.1% | 53.1% |
| 3753991 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.69 | 51.0 | 5.04e-01 | 79.1% | 75.6% |
| 3220929 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 48.0 | 4.13e-01 | 97.7% | 46.7% |
| 4094478 | 391.1.1.13 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › VWC2L_2nd | 0.65 | 47.0 | 4.25e-01 | 81.4% | 54.7% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.63 | 51.0 | 4.58e-01 | 88.4% | 64.4% |
| 3651210 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.63 | 50.0 | 4.53e-01 | 88.4% | 63.3% |
| 3397582 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 50.0 | 3.19e-01 | 95.3% | 74.7% |
| 3841251 | 389.1.1.1 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF | 0.61 | 44.0 | 4.31e-01 | 81.4% | 72.0% |
| 4291905 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.61 | 51.0 | 3.13e-01 | 100.0% | 79.0% |
| 4943645 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 46.0 | 3.44e-01 | 88.4% | 31.7% |
| 4355970 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.60 | 39.0 | 2.48e-01 | 76.7% | 10.7% |
| 4943841 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.59 | 39.0 | 2.51e-01 | 76.7% | 12.1% |
| 4985699 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.59 | 45.0 | 3.88e-01 | 88.4% | 58.7% |
| 3894798 | 4.1.1.243 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa | 0.58 | 43.0 | 4.35e-01 | 88.4% | 84.4% |
| 5038252 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.58 | 38.0 | 2.44e-01 | 76.7% | 11.9% |
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 45.0 | 4.54e-01 | 97.7% | 91.1% |
| 4138663 | 4099.1.1.3 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 | 0.57 | 41.0 | 3.69e-01 | 79.1% | 55.4% |
| 3581896 | 4.1.1.249 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 | 0.56 | 39.0 | 3.60e-01 | 88.4% | 50.8% |
| 4004916 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.55 | 43.0 | 3.77e-01 | 97.7% | 56.0% |
| 4188283 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 40.0 | 3.46e-01 | 95.3% | 46.3% |
| 4958282 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.54 | 42.0 | 2.59e-01 | 97.7% | 63.1% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 4.08e-01 | 97.7% | 90.9% |
| 4951973 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 41.0 | 3.92e-01 | 95.3% | 80.0% |
| 4228328 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.52 | 41.0 | 3.60e-01 | 100.0% | 100.0% |
| 4426056 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.52 | 40.0 | 2.94e-01 | 97.7% | 31.6% |
| 4983591 | 2005.1.1.10 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF | 0.52 | 35.0 | 2.32e-01 | 76.7% | 13.5% |
| 4983539 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 40.0 | 2.64e-01 | 100.0% | 41.9% |
| 4032478 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 41.0 | 3.78e-01 | 100.0% | 90.8% |
| 3898522 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.60e-01 | 93.0% | 72.0% |
| None | — | 0.50 | 41.0 | 3.03e-01 | 100.0% | 41.9% | |
| 3658182 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 36.0 | 2.51e-01 | 79.1% | 56.4% |