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AGF91224.1

Arc-Vir

JF974305__AGF91224.1__HAPG-00038__00038

Identity

Accession:
JF974305 ↗
Protein ID:
AGF91224.1 ↗
Kingdom:
archaea

Quality

62.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Halorubrum_phage_GNf2

TaxID: 889959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 79-130
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14520.13 best HHH_5 34.2 3.90e-08 94.2% 84.2%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zj8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.94 87.0 8.47e-01 100.0% 91.2%
2i1qA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.91 84.0 7.85e-01 100.0% 83.9%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.86 76.0 7.00e-01 100.0% 77.9%
3osnA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.84 72.0 6.31e-01 100.0% 64.9%
2bgwA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.82 71.0 6.32e-01 100.0% 68.9%
4q45A03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.80 67.0 6.61e-01 100.0% 89.1%
5m59A11 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.80 71.0 6.59e-01 100.0% 90.8%
5zrxA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.79 70.0 6.72e-01 100.0% 91.5%
2q0zX02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.79 70.0 6.75e-01 100.0% 89.7%
2kivA02 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.78 67.0 6.48e-01 100.0% 91.7%
2dflA01 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.76 65.0 6.25e-01 100.0% 86.7%
2f3nA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.76 66.0 6.15e-01 100.0% 81.5%
1x9xA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.75 63.0 6.06e-01 100.0% 87.1%
1pk1B00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.75 65.0 5.91e-01 100.0% 77.1%
2kivA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.74 62.0 5.92e-01 100.0% 95.2%
1e9rA02 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.62 50.0 4.09e-01 100.0% 75.2%
2do9A01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 48.0 4.23e-01 90.4% 86.9%
2p0wA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 40.0 4.01e-01 96.2% 85.2%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4152195 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.97 91.0 7.86e-01 100.0% 69.3%
5041504 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.95 89.0 7.90e-01 100.0% 74.3%
5076923 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.95 88.0 7.85e-01 100.0% 74.3%
4948001 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.95 88.0 8.08e-01 100.0% 80.0%
4968089 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.95 88.0 8.33e-01 100.0% 86.7%
4470895 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.94 87.0 8.55e-01 100.0% 94.5%
5061085 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.93 86.0 8.20e-01 100.0% 86.7%
4932604 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.93 87.0 7.36e-01 100.0% 65.0%
5034266 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.93 86.0 8.19e-01 100.0% 86.7%
4944206 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.93 85.0 8.11e-01 100.0% 86.7%
4995116 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.92 84.0 8.25e-01 100.0% 94.5%
5039719 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.91 82.0 7.81e-01 98.1% 85.0%
4946797 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.91 84.0 7.76e-01 100.0% 80.0%
5039718 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.91 83.0 8.18e-01 100.0% 94.5%
4945133 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.91 83.0 7.78e-01 100.0% 82.5%
4234483 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.90 82.0 7.84e-01 100.0% 86.7%
4975251 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.89 82.0 7.76e-01 100.0% 86.7%
4981273 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.89 79.0 7.58e-01 98.1% 86.4%
5059290 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.88 80.0 7.88e-01 100.0% 94.5%
3410797 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.88 80.0 7.64e-01 100.0% 90.0%
3998341 102.5.1.9 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › DUF7898 0.88 79.0 7.15e-01 100.0% 75.7%
5060570 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.88 79.0 6.63e-01 100.0% 61.2%
4963018 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.88 79.0 7.79e-01 100.0% 96.4%
5052695 102.1.1.119 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.87 77.0 5.82e-01 98.1% 53.3%
3987397 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.87 79.0 7.08e-01 100.0% 77.1%
4672295 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.87 78.0 6.59e-01 100.0% 61.2%
4944083 102.1.1.182 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 0.86 78.0 7.01e-01 100.0% 74.3%
5065201 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.86 78.0 7.23e-01 100.0% 80.0%
4041283 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.86 77.0 7.39e-01 100.0% 86.7%
3973085 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.86 77.0 7.33e-01 100.0% 86.7%
3976130 102.1.1.23 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH 0.85 72.0 6.53e-01 100.0% 70.0%
5018066 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 76.0 7.09e-01 100.0% 80.0%
None — 0.85 73.0 6.81e-01 100.0% 76.9%
4246524 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.85 75.0 6.80e-01 100.0% 74.3%
4065282 102.1.1.23 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH 0.85 72.0 6.86e-01 100.0% 81.7%
5076446 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.85 75.0 6.65e-01 100.0% 69.3%
5083423 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.84 75.0 7.21e-01 100.0% 86.7%
3688549 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.84 77.0 7.32e-01 100.0% 88.3%
5056035 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.84 73.0 7.02e-01 100.0% 85.0%
4330092 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.84 76.0 7.07e-01 100.0% 85.9%
3184108 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.84 75.0 7.19e-01 100.0% 86.7%
4147532 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.84 74.0 6.90e-01 100.0% 84.6%
3889826 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 74.0 7.27e-01 100.0% 94.5%
4975986 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 73.0 6.67e-01 100.0% 74.3%
3390495 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 71.0 6.84e-01 100.0% 83.3%
4946451 102.1.1.182 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Rad51 0.83 74.0 6.70e-01 100.0% 85.7%
4982189 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 75.0 6.76e-01 100.0% 74.3%
4977890 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.83 73.0 6.80e-01 100.0% 80.0%
4241523 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.83 74.0 6.52e-01 100.0% 76.0%
4015442 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.83 74.0 6.51e-01 100.0% 78.7%
None — 0.83 70.0 6.92e-01 100.0% 89.1%
4032279 102.1.1.51 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.83 70.0 6.67e-01 100.0% 81.7%
4979223 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.82 73.0 6.98e-01 100.0% 86.7%
3742526 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.82 72.0 6.93e-01 100.0% 88.3%
None — 0.82 71.0 6.61e-01 100.0% 78.5%
4113412 102.1.1.100 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › PF29713 0.82 73.0 6.86e-01 100.0% 90.5%
3608219 102.5.1.1 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins › HHH_5 0.82 72.0 7.09e-01 100.0% 94.5%
3865559 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.81 72.0 6.88e-01 100.0% 86.7%
3551495 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 72.0 6.87e-01 100.0% 86.7%
4365785 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.81 68.0 6.75e-01 100.0% 90.9%
3276791 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 72.0 6.86e-01 100.0% 90.0%
4031699 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.81 68.0 6.70e-01 100.0% 89.1%
3588005 102.1.1.51 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH_1 0.80 68.0 6.24e-01 100.0% 71.4%
4086283 102.1.1.23 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › IMS_HHH 0.80 69.0 6.11e-01 100.0% 66.7%
3495288 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.80 71.0 6.27e-01 100.0% 72.0%
3578854 102.1.1.77 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › TNK-like_SAM 0.80 70.0 5.75e-01 100.0% 57.9%
4809706 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.80 71.0 5.60e-01 100.0% 50.0%
None — 0.80 66.0 6.38e-01 100.0% 81.7%
3791428 102.1.1.77 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › TNK-like_SAM 0.80 69.0 6.46e-01 100.0% 84.6%
5052693 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.79 67.0 6.60e-01 96.2% 96.4%
3532794 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.79 69.0 6.26e-01 100.0% 77.1%
4508617 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.79 67.0 6.59e-01 100.0% 90.9%
3570848 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.79 68.0 6.08e-01 100.0% 72.0%
3882238 102.1.1.16 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.78 68.0 6.21e-01 100.0% 77.1%
3706292 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.78 68.0 6.52e-01 100.0% 88.3%
3907308 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.78 67.0 6.01e-01 100.0% 72.0%
3894996 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.78 67.0 5.87e-01 100.0% 67.5%
3990995 102.1.1.50 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CEP-1_C 0.77 66.0 5.70e-01 100.0% 63.5%
4024493 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.77 64.0 6.35e-01 100.0% 92.7%
3617542 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.76 66.0 6.34e-01 100.0% 86.7%
3541981 102.1.1.1 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.76 65.0 6.00e-01 100.0% 75.7%
4664943 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.74 63.0 5.86e-01 100.0% 76.5%
365854 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.71 60.0 5.81e-01 100.0% 85.2%
3716088 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 53.0 5.06e-01 100.0% 89.2%
3786646 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.64 53.0 5.16e-01 100.0% 98.3%