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AGF91274.1
Arc-VirJF974305__AGF91274.1__HAPG-00089__00088
Identity
- Accession:
- JF974305 ↗
- Protein ID:
- AGF91274.1 ↗
- Kingdom:
- archaea
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 889959
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-66
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.81 | 56.0 | 6.40e-01 | 75.4% | 100.0% |
| 4hz4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.79 | 55.0 | 4.55e-01 | 72.3% | 75.9% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.78 | 55.0 | 6.08e-01 | 72.3% | 92.2% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.78 | 56.0 | 5.14e-01 | 76.9% | 63.5% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.77 | 51.0 | 5.63e-01 | 72.3% | 86.5% |
| 3craB01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.76 | 54.0 | 4.87e-01 | 73.8% | 61.6% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 51.0 | 5.55e-01 | 70.8% | 84.9% |
| 2fjcB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.75 | 52.0 | 3.90e-01 | 72.3% | 31.4% |
| 5lnkA00 | 1.20.58.1610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 | 0.71 | 50.0 | 4.12e-01 | 73.8% | 52.2% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.70 | 56.0 | 5.67e-01 | 86.2% | 100.0% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.68 | 50.0 | 3.59e-01 | 78.5% | 71.7% |
| 1e52A00 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.68 | 47.0 | 4.93e-01 | 72.3% | 83.9% |
| 3hulA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.67 | 46.0 | 3.82e-01 | 83.1% | 40.9% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.67 | 61.0 | 5.30e-01 | 100.0% | 71.9% |
| 3no6A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.66 | 51.0 | 3.55e-01 | 86.2% | 81.7% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.65 | 50.0 | 3.90e-01 | 83.1% | 100.0% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 43.0 | 4.69e-01 | 73.8% | 95.8% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 43.0 | 4.43e-01 | 72.3% | 78.0% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 55.0 | 4.99e-01 | 95.4% | 92.0% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.63 | 55.0 | 4.46e-01 | 93.8% | 62.9% |
| 7kznP01 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.62 | 45.0 | 4.00e-01 | 76.9% | 69.9% |
| 3hpcX00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.60 | 48.0 | 3.70e-01 | 90.8% | 69.0% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 34.0 | 3.30e-01 | 72.3% | 56.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3183271 | 216.1.1.1 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con | 0.82 | 58.0 | 4.04e-01 | 73.8% | 24.6% |
| 4269685 | 192.11.1.1 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB › UVR | 0.79 | 53.0 | 5.44e-01 | 70.8% | 71.4% |
| 3999931 | 192.17.1.1 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › Rbsn | 0.79 | 54.0 | 5.43e-01 | 70.8% | 72.3% |
| None | — | 0.77 | 53.0 | 3.09e-01 | 72.3% | 8.9% | |
| 3806239 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.77 | 53.0 | 5.11e-01 | 72.3% | 62.7% |
| 1172151 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.76 | 52.0 | 4.70e-01 | 72.3% | 62.2% |
| 4600223 | 616.1.1.33 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › UPF0262 | 0.74 | 57.0 | 4.36e-01 | 83.1% | 80.7% |
| 4995391 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.73 | 51.0 | 4.62e-01 | 73.8% | 54.4% |
| 3508752 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.72 | 52.0 | 4.28e-01 | 76.9% | 45.2% |
| 4027274 | 273.1.1.2 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C | 0.71 | 50.0 | 3.90e-01 | 75.4% | 76.6% |
| 3711850 | 109.4.1.202 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_16 | 0.70 | 49.0 | 3.76e-01 | 73.8% | 51.4% |
| 3300012 | 109.4.1.73 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head | 0.67 | 47.0 | 2.69e-01 | 73.8% | 14.1% |
| 3448294 | 3826.1.1.33 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › eIF-4B | 0.64 | 53.0 | 4.83e-01 | 89.2% | 77.6% |
| 3707261 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 45.0 | 3.67e-01 | 75.4% | 39.2% |
| 3208919 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.55 | 37.0 | 3.21e-01 | 72.3% | 70.0% |
| 3677678 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.53 | 37.0 | 2.61e-01 | 73.8% | 59.1% |