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AGF91277.1

Arc-Vir

JF974305__AGF91277.1__HAPG-00092__00091

Identity

Accession:
JF974305 ↗
Protein ID:
AGF91277.1 ↗
Kingdom:
archaea

Quality

70.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Halorubrum_phage_GNf2

TaxID: 889959

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-64
PDB
Domain cluster: representative
CATH (81)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 59.0 4.91e-01 100.0% 67.1%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.70 59.0 3.90e-01 100.0% 43.1%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.70 48.0 4.14e-01 100.0% 43.9%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.69 53.0 4.01e-01 92.3% 95.3%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 3.68e-01 100.0% 28.4%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 3.86e-01 100.0% 36.1%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 3.92e-01 100.0% 37.8%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 58.0 3.46e-01 100.0% 26.3%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 3.86e-01 100.0% 34.9%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 3.84e-01 100.0% 32.7%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 56.0 4.11e-01 100.0% 47.8%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.68 53.0 3.82e-01 100.0% 91.5%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 57.0 3.96e-01 100.0% 38.4%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 3.93e-01 100.0% 40.0%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.67 55.0 3.89e-01 100.0% 45.9%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 3.88e-01 100.0% 38.2%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 57.0 3.88e-01 100.0% 38.0%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.66 55.0 3.84e-01 100.0% 36.2%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 3.80e-01 100.0% 37.1%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 54.0 3.82e-01 100.0% 41.7%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 54.0 3.74e-01 100.0% 33.1%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 49.0 4.04e-01 92.3% 46.5%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 50.0 3.84e-01 89.7% 87.6%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 3.80e-01 100.0% 43.5%
3gasB02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 53.0 3.52e-01 100.0% 31.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 51.0 3.74e-01 100.0% 43.2%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 51.0 3.63e-01 100.0% 28.5%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 51.0 3.69e-01 100.0% 29.9%
4aw7A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 50.0 3.70e-01 100.0% 32.2%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 53.0 3.50e-01 100.0% 22.8%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 51.0 3.74e-01 100.0% 45.2%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 51.0 3.33e-01 100.0% 20.3%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 48.0 3.89e-01 100.0% 95.8%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 52.0 4.21e-01 100.0% 53.8%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 50.0 4.24e-01 97.4% 98.6%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 51.0 3.05e-01 97.4% 28.9%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 48.0 3.53e-01 100.0% 30.3%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 50.0 4.77e-01 100.0% 95.9%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.60 50.0 3.33e-01 100.0% 35.5%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 47.0 3.35e-01 100.0% 58.5%
3pz8C00 2.40.240.130 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.60 47.0 3.87e-01 94.9% 92.6%
4dohE02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 3.72e-01 100.0% 39.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.60 46.0 3.73e-01 97.4% 55.4%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.59 49.0 4.29e-01 100.0% 69.7%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.59 49.0 3.00e-01 100.0% 37.2%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.47e-01 71.8% 49.2%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.58 44.0 3.38e-01 100.0% 31.9%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 48.0 3.53e-01 100.0% 54.1%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 48.0 3.73e-01 100.0% 57.1%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.58 48.0 3.47e-01 100.0% 51.1%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 47.0 3.46e-01 100.0% 52.8%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.57 45.0 3.14e-01 100.0% 29.4%
1dyqA02 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 42.0 3.02e-01 87.2% 76.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.57 48.0 3.67e-01 100.0% 55.2%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 43.0 2.99e-01 97.4% 42.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 46.0 3.54e-01 100.0% 55.0%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 48.0 3.21e-01 100.0% 27.5%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 45.0 3.50e-01 100.0% 64.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 45.0 3.36e-01 100.0% 73.3%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.56 44.0 3.78e-01 100.0% 60.5%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.56 47.0 3.66e-01 100.0% 66.3%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 37.0 2.89e-01 74.4% 83.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.27e-01 100.0% 33.8%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 45.0 3.49e-01 100.0% 48.6%
1txkA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 46.0 2.67e-01 100.0% 16.4%
1wr2A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 45.0 3.07e-01 100.0% 66.9%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.55 44.0 3.33e-01 100.0% 56.0%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 45.0 2.86e-01 100.0% 31.3%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.55 43.0 3.26e-01 100.0% 33.1%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.54 41.0 3.30e-01 100.0% 43.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 41.0 3.41e-01 100.0% 54.3%
3dn7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 2.97e-01 92.3% 86.2%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 2.96e-01 100.0% 40.4%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 38.0 2.57e-01 100.0% 18.1%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 2.98e-01 100.0% 54.2%
2j4xA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 39.0 2.96e-01 94.9% 79.0%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 39.0 2.67e-01 87.2% 31.1%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.34e-01 89.7% 80.0%
2xhkB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.02e-01 100.0% 39.0%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.51 37.0 2.81e-01 100.0% 28.3%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.50 35.0 3.06e-01 89.7% 90.5%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4394681 862.1.1.4 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › RepB_primase 0.82 71.0 4.44e-01 100.0% 25.9%
3766042 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.81 69.0 5.03e-01 100.0% 54.5%
5029321 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 61.0 4.06e-01 100.0% 96.5%
3957598 2004.1.2.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP 0.73 62.0 3.83e-01 100.0% 20.0%
4969863 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.72 61.0 5.00e-01 100.0% 68.0%
3715676 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 56.0 4.54e-01 100.0% 43.3%
3484186 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.71 58.0 4.28e-01 100.0% 52.2%
4648475 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.70 60.0 5.28e-01 100.0% 86.7%
5078886 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.70 56.0 4.26e-01 100.0% 38.2%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 56.0 5.27e-01 97.4% 100.0%
2559791 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.69 57.0 4.41e-01 100.0% 53.7%
3969006 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 56.0 5.50e-01 100.0% 93.3%
3501768 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.69 56.0 4.82e-01 100.0% 85.7%
3377737 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.69 58.0 4.35e-01 100.0% 50.5%
3376254 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.69 56.0 4.53e-01 100.0% 96.5%
146929 3115.3.1.1 ↗ a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.69 53.0 5.00e-01 100.0% 76.8%
4004704 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.69 54.0 5.33e-01 100.0% 93.3%
3636139 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.68 53.0 4.36e-01 100.0% 45.0%
4007508 3115.6.1.2 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.68 55.0 5.22e-01 100.0% 84.0%
3649276 887.1.1.0 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.67 54.0 4.02e-01 100.0% 34.2%
3638157 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 54.0 3.27e-01 100.0% 12.9%
4298891 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.67 56.0 3.43e-01 100.0% 28.5%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.67 55.0 5.22e-01 100.0% 94.0%
3742309 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.67 56.0 4.34e-01 100.0% 45.0%
3941111 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 53.0 3.88e-01 100.0% 66.9%
3785832 3792.1.1.2 ↗ beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › APC1_3rd 0.66 55.0 4.15e-01 100.0% 40.0%
3250734 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.66 53.0 2.97e-01 100.0% 7.2%
4941845 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 56.0 5.14e-01 100.0% 98.1%
3390761 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.65 53.0 4.19e-01 97.4% 76.7%
3672250 207.1.1.116 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 0.65 50.0 3.41e-01 100.0% 22.6%
3783481 11.1.1.642 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.64 54.0 3.88e-01 100.0% 54.2%
3942988 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.64 52.0 4.59e-01 100.0% 69.2%
4154378 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.64 46.0 4.14e-01 92.3% 52.3%
3222254 304.9.1.40 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 0.64 50.0 3.76e-01 100.0% 68.9%
3880215 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 51.0 3.49e-01 97.4% 34.4%
4443054 3115.1.1.9 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › YjeJ 0.63 53.0 3.84e-01 100.0% 55.0%
3603684 275.1.1.1 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 0.63 51.0 4.40e-01 100.0% 70.0%
3529236 11.1.1.229 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IRK_C 0.63 51.0 3.47e-01 100.0% 38.8%
4463006 3115.2.1.0 ↗ a+b two layers › GP2-like › GP2 › GP2 0.63 51.0 4.99e-01 100.0% 97.8%
3508713 382.1.1.25 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.63 48.0 3.68e-01 100.0% 48.3%
3170957 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.63 50.0 3.73e-01 100.0% 97.4%
3972526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.31e-01 100.0% 94.3%
3723454 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.62 51.0 3.47e-01 100.0% 25.0%
4796557 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.62 50.0 4.48e-01 100.0% 77.8%
3958897 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.62 50.0 3.71e-01 100.0% 33.3%
3242250 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 3.70e-01 100.0% 40.4%
3594014 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.61 49.0 3.08e-01 97.4% 20.0%
3217608 284.1.2.1 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C 0.61 49.0 3.82e-01 100.0% 96.0%
5027350 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.61 47.0 3.41e-01 100.0% 34.8%
5046850 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.60 52.0 3.99e-01 100.0% 57.8%
3285401 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 46.0 4.02e-01 100.0% 66.7%
4120485 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 50.0 2.95e-01 100.0% 26.4%
5082727 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 3.86e-01 100.0% 46.0%
5032790 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 3.88e-01 100.0% 47.0%
3467990 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.59 43.0 2.38e-01 84.6% 9.0%
5033012 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 51.0 3.91e-01 100.0% 49.5%
3615237 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.59 43.0 2.64e-01 100.0% 15.8%
4526825 11.1.1.67 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF525 0.59 48.0 3.50e-01 100.0% 52.0%
4028041 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.58 43.0 2.69e-01 87.2% 78.4%
4012673 210.2.1.0 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.57 46.0 2.71e-01 100.0% 31.3%
3399430 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.57 46.0 3.85e-01 100.0% 50.7%
3960302 11.1.1.47 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.57 46.0 3.32e-01 100.0% 29.3%
3988697 10.12.1.31 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_5 0.56 46.0 3.11e-01 100.0% 26.8%
3722550 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.55 44.0 2.74e-01 97.4% 28.4%
185509 10.26.1.2 ↗ beta sandwiches › jelly-roll › Histone H3 binding protein ORF158L › Histone H3 binding protein ORF158L › ORF158L-like 0.55 47.0 3.27e-01 100.0% 33.8%
3935404 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.55 41.0 3.28e-01 87.2% 96.7%
3382922 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 41.0 2.44e-01 87.2% 95.6%
5044524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 3.47e-01 100.0% 51.4%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.55 41.0 2.97e-01 89.7% 73.3%
3971673 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 43.0 2.72e-01 100.0% 15.2%
3704468 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 47.0 3.40e-01 100.0% 52.7%
4943472 3662.1.1.0 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.53 38.0 3.06e-01 89.7% 41.9%
3954591 1075.1.2.3 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DUF2567 0.53 44.0 3.00e-01 100.0% 66.9%
4259223 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 43.0 2.74e-01 100.0% 29.4%
3989046 862.1.1.8 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.53 40.0 2.70e-01 100.0% 44.4%
4507405 375.1.1.128 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT 0.53 43.0 4.19e-01 97.4% 93.3%
3798928 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.53 43.0 2.44e-01 92.3% 10.1%
3371234 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 43.0 2.94e-01 100.0% 34.4%
4033537 1119.1.1.1 ↗ a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.52 37.0 2.53e-01 100.0% 23.0%
4161260 7056.1.1.3 ↗ few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT 0.52 43.0 4.22e-01 100.0% 95.6%
2529893 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.51 42.0 3.59e-01 100.0% 97.1%
3320228 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.51 42.0 2.34e-01 97.4% 19.3%
3997436 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 41.0 3.05e-01 100.0% 40.0%