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AGF91291.1

Arc-Vir

JF974305__AGF91291.1__HAPG-00106__00105

Identity

Accession:
JF974305 ↗
Protein ID:
AGF91291.1 ↗
Kingdom:
archaea

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Thumleimavirales› Soleiviridae› Halorubrum_phage_GNf2

TaxID: 889959

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-261
PDB
Domain cluster: rep: replication-associated_protein__YP_009001745__Dragonfly_larvae_associated_circular_virus-5_Viruses.__X__D171-266
D2 medium residues 4-108
PDB
Domain cluster: rep: replication_associated_protein__YP_009237599__Lake_Sarah-associated_circular_molecule_10_Viruses.__X__D15-119
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h8oA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.87 74.0 7.78e-01 92.4% 97.9%
2hw0A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.82 76.0 7.35e-01 99.0% 89.6%
1f08B00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.78 69.0 6.18e-01 96.2% 75.2%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.78 70.0 6.73e-01 97.1% 94.9%
1r9wA00 3.40.1310.10 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.74 68.0 6.16e-01 99.0% 81.2%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 52.0 5.49e-01 74.3% 92.6%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.72 49.0 5.55e-01 70.5% 100.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.71 49.0 5.55e-01 70.5% 100.0%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 54.0 5.30e-01 84.8% 84.5%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.68 57.0 4.56e-01 91.4% 71.0%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 52.0 5.57e-01 81.0% 98.9%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 47.0 5.45e-01 95.2% 100.0%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.68 56.0 4.89e-01 90.5% 74.1%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.68 49.0 5.29e-01 76.2% 93.3%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.67 47.0 5.39e-01 99.0% 100.0%
2efpA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.67 49.0 5.10e-01 77.1% 86.7%
2dbbA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.66 49.0 5.16e-01 78.1% 92.5%
2cq4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 45.0 4.68e-01 70.5% 83.5%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.65 46.0 5.19e-01 99.0% 98.7%
2raqA01 3.30.70.1340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain 0.65 49.0 5.31e-01 100.0% 97.6%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 49.0 5.24e-01 81.9% 95.7%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 42.0 4.91e-01 98.1% 97.3%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.63 47.0 5.16e-01 98.1% 97.6%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 48.0 5.11e-01 80.0% 100.0%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 48.0 5.15e-01 95.2% 97.8%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.61 55.0 4.88e-01 100.0% 87.5%
3vteA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.61 51.0 4.26e-01 91.4% 69.7%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.61 47.0 4.86e-01 97.1% 88.9%
6vh5C03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 46.0 4.86e-01 96.2% 96.6%
3hi9D00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 44.0 4.92e-01 99.0% 100.0%
1x4hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 42.0 4.16e-01 74.3% 79.3%
4ushA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 51.0 5.17e-01 97.1% 95.1%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 4.66e-01 97.1% 96.4%
2xs2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 42.0 4.59e-01 77.1% 92.0%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.58 49.0 4.06e-01 91.4% 67.4%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 46.0 4.86e-01 98.1% 94.7%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 5.04e-01 99.0% 100.0%
2mkcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 47.0 4.53e-01 91.4% 87.3%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 45.0 4.68e-01 97.1% 95.7%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 46.0 3.85e-01 91.4% 63.2%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.55 48.0 4.48e-01 96.2% 81.1%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 42.0 4.34e-01 99.0% 87.6%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 33.0 2.80e-01 100.0% 33.9%
2dnmA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 41.0 4.18e-01 98.1% 81.6%
5eokA04 3.50.4.10 Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor 0.55 36.0 3.90e-01 88.6% 83.1%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.54 39.0 4.20e-01 79.0% 91.9%
6wl5A01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.52 42.0 3.78e-01 87.6% 83.2%
6jp6D01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 39.0 3.01e-01 88.6% 36.2%
7zhdA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.51 41.0 3.73e-01 88.6% 81.0%
7r3eB02 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.50 39.0 3.32e-01 81.0% 74.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2391478 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.87 74.0 7.78e-01 92.4% 97.9%
2796430 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.85 76.0 7.75e-01 95.2% 96.1%
3621982 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.83 75.0 7.41e-01 96.2% 90.9%
4218099 304.55.1.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Gemini_AL1 0.77 71.0 6.46e-01 99.0% 97.8%
2791434 304.55.1.10 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD 0.76 70.0 6.10e-01 99.0% 73.7%
5112 304.55.1.10 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PPV_E1_DBD 0.74 68.0 6.16e-01 99.0% 81.2%
4304749 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.73 63.0 4.70e-01 93.3% 53.8%
3937809 304.55.1.15 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N 0.72 61.0 5.02e-01 91.4% 89.4%
4947596 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.71 53.0 5.24e-01 77.1% 79.1%
4945049 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.71 52.0 5.50e-01 77.1% 86.3%
3728284 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.70 49.0 5.24e-01 71.4% 91.1%
4020643 304.8.1.1 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.70 52.0 5.41e-01 78.1% 97.9%
3596967 304.46.1.0 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain 0.70 58.0 5.09e-01 90.5% 73.4%
4030594 304.46.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G 0.69 57.0 4.97e-01 89.5% 73.8%
4944633 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 47.0 5.41e-01 97.1% 98.7%
3949560 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 52.0 5.54e-01 80.0% 95.6%
4953681 304.8.1.8 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.68 50.0 5.53e-01 99.0% 100.0%
4682347 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.68 56.0 4.21e-01 91.4% 57.8%
4993405 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 47.0 5.33e-01 72.4% 100.0%
4187183 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.67 46.0 4.72e-01 70.5% 85.0%
3974161 304.13.1.1 ↗ a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB 0.67 47.0 4.59e-01 72.4% 76.1%
5004700 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.66 46.0 5.15e-01 98.1% 94.9%
5008282 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.66 48.0 5.37e-01 100.0% 100.0%
3471441 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.66 47.0 4.58e-01 97.1% 67.8%
4944337 304.59.1.0 ↗ a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like 0.65 49.0 5.40e-01 98.1% 98.8%
4956967 304.59.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 0.65 48.0 5.17e-01 100.0% 91.1%
4027426 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.65 46.0 4.28e-01 97.1% 59.2%
4971406 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 45.0 5.06e-01 98.1% 95.0%
4319369 304.8.1.1 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.64 47.0 4.99e-01 76.2% 97.8%
4033758 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 4.95e-01 98.1% 93.8%
4016693 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.64 54.0 3.88e-01 91.4% 48.5%
5000078 304.59.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 0.64 50.0 5.21e-01 100.0% 90.5%
4954911 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 47.0 5.14e-01 99.0% 95.3%
4018050 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.64 53.0 3.98e-01 90.5% 57.6%
5021042 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 47.0 5.06e-01 99.0% 94.1%
4935238 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 4.97e-01 98.1% 94.9%
3301203 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 4.96e-01 98.1% 93.8%
4946216 304.4.1.83 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › HTH_24 0.64 55.0 5.19e-01 92.4% 79.2%
3784654 304.8.1.1 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C 0.63 48.0 5.00e-01 94.3% 89.4%
3969661 304.8.1.103 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26954 0.63 48.0 5.18e-01 100.0% 98.8%
4964918 304.59.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH889-like › MTH889-like › DUF211 0.63 48.0 5.15e-01 100.0% 95.6%
5053714 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 46.0 4.23e-01 98.1% 60.0%
4599086 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 45.0 4.87e-01 97.1% 89.9%
3623982 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 48.0 4.59e-01 82.9% 72.8%
5052911 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 57.0 3.61e-01 99.0% 58.7%
4987588 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.61 43.0 4.52e-01 99.0% 82.1%
3797612 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 45.0 4.96e-01 93.3% 98.8%
3471991 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 52.0 4.33e-01 100.0% 65.8%
None — 0.58 49.0 4.48e-01 91.4% 74.1%
3915860 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 35.0 4.10e-01 82.9% 94.3%
3398289 390.1.1.8 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_4 0.55 37.0 3.86e-01 89.5% 74.7%
4025874 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 48.0 4.82e-01 95.2% 96.2%
3647483 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 42.0 4.34e-01 96.2% 89.0%
4047925 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.53 45.0 4.38e-01 94.3% 100.0%
3979683 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.52 42.0 3.74e-01 90.5% 77.5%
4400469 101.1.2.841 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27221 0.50 41.0 3.63e-01 90.5% 77.2%
D3 medium residues 118-161
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 45.0 2.81e-01 100.0% 23.5%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.54 40.0 3.18e-01 79.5% 66.7%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 41.0 3.65e-01 84.1% 62.5%
3rlfF04 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.54 45.0 2.92e-01 100.0% 97.9%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.54 42.0 2.75e-01 100.0% 56.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947188 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.73 60.0 5.74e-01 100.0% 83.6%
3808328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 43.0 3.17e-01 100.0% 29.6%