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JF974313.1__AGN34345.1__VPSG_00026__00026
Bact-VirJF974313.1__AGN34345.1__VPSG_00026__00026
Identity
- Accession:
- JF974313 ↗
- Kingdom:
- phage
Quality
86.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-79
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jscB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 4.16e-01 | 95.1% | 87.5% |
| 3jcuZ00 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.58 | 42.0 | 3.81e-01 | 82.9% | 57.4% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.54 | 39.0 | 3.18e-01 | 82.9% | 41.1% |
D2
high
residues 193-284
Domain cluster:
rep: OM835951.1__UNI73656.1__KP12_246__00246__D220-313
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.77 | 41.0 | 5.34e-01 | 98.9% | 96.0% |
| 1mt1B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.62 | 47.0 | 4.43e-01 | 88.0% | 66.1% |
| 5l6gA02 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.58 | 45.0 | 3.40e-01 | 83.7% | 78.6% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 40.0 | 4.15e-01 | 77.2% | 98.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.54 | 38.0 | 3.99e-01 | 100.0% | 80.5% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.54 | 42.0 | 4.29e-01 | 84.8% | 97.7% |
| 1s7hA01 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 34.0 | 3.62e-01 | 90.2% | 76.2% |
| 3fsyA02 | 3.30.60.70 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes | 0.52 | 26.0 | 3.17e-01 | 95.7% | 95.0% |
| 1qupA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 36.0 | 3.95e-01 | 76.1% | 95.7% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.51 | 38.0 | 3.14e-01 | 80.4% | 60.2% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.51 | 37.0 | 3.85e-01 | 98.9% | 84.3% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 44.0 | 3.90e-01 | 100.0% | 84.8% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3689357 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.78 | 71.0 | 5.77e-01 | 100.0% | 63.6% |
| 3698242 | 821.1.1.10 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 | 0.73 | 67.0 | 6.03e-01 | 100.0% | 76.4% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.66 | 40.0 | 4.47e-01 | 94.6% | 78.6% |
| 4565839 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.62 | 40.0 | 4.83e-01 | 100.0% | 100.0% |
| 3977819 | 304.147.1.0 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain | 0.59 | 38.0 | 4.55e-01 | 98.9% | 100.0% |
| 4947413 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.58 | 40.0 | 4.65e-01 | 98.9% | 100.0% |
| 3973395 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.58 | 37.0 | 4.48e-01 | 97.8% | 100.0% |
| 4682624 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.56 | 42.0 | 4.39e-01 | 84.8% | 87.1% |
| 4949196 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.56 | 36.0 | 4.32e-01 | 98.9% | 100.0% |
| 4974988 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 41.0 | 4.60e-01 | 96.7% | 100.0% |
| 4934529 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 40.0 | 4.56e-01 | 96.7% | 100.0% |
| 4975073 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.55 | 39.0 | 4.46e-01 | 98.9% | 97.1% |
| 5066439 | 304.3.1.14 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › DrrA1-3_C | 0.54 | 37.0 | 4.26e-01 | 98.9% | 100.0% |
| 4468424 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.54 | 40.0 | 4.17e-01 | 84.8% | 87.1% |
| 4179371 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.53 | 45.0 | 3.45e-01 | 97.8% | 98.0% |
| 4517262 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.53 | 40.0 | 4.15e-01 | 85.9% | 87.1% |
| 3164753 | 4943.1.1.1 ↗ | a+b two layers › YcgL/NE1680-like › YcgL/NE1680-like › YcgL/NE1680-like › YcgL | 0.53 | 40.0 | 4.33e-01 | 85.9% | 98.7% |
| 3914432 | 304.11.1.13 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF4708 | 0.53 | 39.0 | 3.18e-01 | 79.3% | 46.7% |
| 4057352 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.53 | 45.0 | 3.41e-01 | 100.0% | 96.1% |
| 4929350 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 43.0 | 4.59e-01 | 100.0% | 100.0% |
| 3764453 | 304.24.1.33 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF4708 | 0.52 | 40.0 | 3.22e-01 | 82.6% | 47.0% |
| 5082818 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.52 | 37.0 | 4.21e-01 | 100.0% | 98.6% |
| 223785 | 4963.1.1.1 ↗ | alpha complex topology › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › N-terminal additional helical subdomain in reovirus polymerase lambda3 › RdRP_4 | 0.52 | 35.0 | 2.40e-01 | 78.3% | 19.2% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.50 | 43.0 | 3.31e-01 | 97.8% | 96.1% |
| 4958723 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.50 | 35.0 | 3.96e-01 | 97.8% | 97.1% |
D3
medium
residues 92-129
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.55 | 40.0 | 3.19e-01 | 84.2% | 38.9% |
D4
medium
residues 144-181
Domain cluster:
rep: NC_049851.1__YP_009904503.1__H1O17_gp125__00125__D104-141