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JF974314.1__AGN34392.1__RHXG_00016__00016

Bact-Vir

JF974314.1__AGN34392.1__RHXG_00016__00016

Identity

Accession:
JF974314 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 75-139
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e4bA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.86 66.0 3.97e-01 89.2% 13.4%
4bwrA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.82 73.0 4.29e-01 95.4% 13.7%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.80 64.0 5.50e-01 89.2% 55.4%
3ddeB00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.74 58.0 4.00e-01 87.7% 63.6%
5domA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.73 65.0 5.84e-01 100.0% 75.6%
4evfA02 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.73 55.0 5.30e-01 98.5% 71.6%
2ff4A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 51.0 3.64e-01 73.8% 46.7%
8an5A01 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.71 62.0 4.49e-01 100.0% 33.9%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.70 62.0 4.26e-01 100.0% 30.1%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.68 45.0 4.59e-01 98.5% 70.3%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.67 48.0 4.97e-01 98.5% 80.3%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.65 52.0 4.03e-01 89.2% 58.2%
4a5dB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.64 55.0 3.82e-01 98.5% 43.5%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 53.0 3.62e-01 100.0% 36.0%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.64 54.0 4.57e-01 98.5% 71.9%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 40.0 3.81e-01 72.3% 53.8%
3hgtA00 3.40.50.12360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 48.0 3.15e-01 83.1% 94.1%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 40.0 4.36e-01 72.3% 81.1%
3ukmA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 43.0 2.92e-01 75.4% 44.8%
1bbnA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 47.0 3.80e-01 86.2% 51.1%
1ohuA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.61 53.0 4.00e-01 100.0% 40.6%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.60 41.0 3.63e-01 72.3% 94.7%
2diwA01 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 50.0 4.06e-01 100.0% 63.8%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.59 38.0 4.08e-01 72.3% 76.4%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.59 51.0 4.32e-01 100.0% 85.0%
3o39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.59 44.0 3.85e-01 80.0% 99.0%
3qwuA03 3.30.70.2160 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 3.69e-01 89.2% 45.3%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.59 41.0 3.67e-01 75.4% 90.7%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 45.0 4.28e-01 84.6% 83.5%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.57 47.0 3.44e-01 100.0% 75.6%
4r0mA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.56 48.0 4.07e-01 95.4% 56.5%
2ig3A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 48.0 3.95e-01 100.0% 70.1%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 34.0 3.85e-01 70.8% 81.2%
2dceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 4.08e-01 92.3% 72.4%
3k2nA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 45.0 3.32e-01 89.2% 76.8%
2v40A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.55 44.0 4.09e-01 92.3% 81.8%
6he0A01 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 46.0 3.94e-01 93.8% 57.9%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 40.0 4.17e-01 87.7% 88.3%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.54 39.0 3.42e-01 76.9% 87.4%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 37.0 3.91e-01 76.9% 83.6%
2vxgA02 1.10.220.100 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 0.54 45.0 4.22e-01 100.0% 100.0%
5z62E00 1.25.40.40 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Cytochrome c oxidase, subunit Va/VI 0.54 45.0 3.89e-01 100.0% 57.8%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.54 42.0 3.93e-01 84.6% 71.6%
1iufA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 36.0 3.48e-01 70.8% 75.3%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.08e-01 96.9% 80.2%
3pjaJ01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.53 45.0 3.68e-01 100.0% 62.6%
2p9xA00 1.10.1200.200 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Protein of unknown function DUF3227 0.53 46.0 4.05e-01 100.0% 66.3%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.42e-01 100.0% 98.6%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 4.03e-01 98.5% 85.5%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 43.0 3.32e-01 100.0% 38.6%
6bs3B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.81e-01 100.0% 43.9%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 41.0 3.53e-01 89.2% 83.2%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4287184 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.87 73.0 4.80e-01 89.2% 24.4%
3644963 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.86 64.0 5.30e-01 87.7% 46.4%
4016725 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.81 66.0 5.87e-01 87.7% 65.6%
3843340 6092.1.1.1 alpha bundles › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › Helical extension domain in Regulator of G-protein signaling 9 › RGS_DHEX 0.78 62.0 5.37e-01 89.2% 56.0%
4231319 4967.1.1.16 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › TERT_C 0.77 63.0 4.51e-01 89.2% 45.9%
4583551 185.1.1.1 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl 0.76 66.0 5.88e-01 100.0% 92.6%
3610947 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 67.0 3.83e-01 100.0% 13.2%
4358653 185.1.1.8 alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Glutenin_hmw 0.73 63.0 5.91e-01 100.0% 77.5%
5052161 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.73 60.0 3.76e-01 89.2% 20.0%
4927302 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.69 59.0 4.73e-01 100.0% 70.7%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.69 55.0 4.87e-01 87.7% 60.0%
3708405 601.19.1.0 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.68 51.0 3.87e-01 80.0% 69.3%
3591179 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 56.0 4.01e-01 100.0% 31.4%
3927348 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 59.0 4.22e-01 100.0% 74.1%
3267513 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.27e-01 98.5% 96.1%
3741450 109.4.1.1508 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Not1, ARM_Cnot1 0.64 54.0 3.16e-01 100.0% 15.7%
4011174 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.63 42.0 3.58e-01 83.1% 41.9%
3608428 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.62 42.0 4.49e-01 70.8% 83.6%
4984435 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.62 54.0 3.56e-01 100.0% 46.2%
3428408 632.2.1.30 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Auxin_canalis 0.62 45.0 4.34e-01 78.5% 72.0%
3390249 4003.1.1.0 alpha arrays › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins › Helical bundle domain in YebC-like proteins 0.60 47.0 4.52e-01 86.2% 76.0%
3384820 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.98e-01 100.0% 48.1%
3348850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 4.26e-01 83.1% 81.2%
4678110 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.60 41.0 3.81e-01 73.8% 57.5%
3460081 109.4.1.1374 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.60 51.0 3.87e-01 100.0% 44.1%
3834278 4133.1.1.1 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.59 46.0 4.69e-01 89.2% 89.2%
3965372 195.1.1.0 alpha complex topology › NusB-like › NusB-like › NusB-like 0.59 47.0 3.89e-01 87.7% 50.0%
3809635 226.1.1.5 a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ 0.59 48.0 4.54e-01 100.0% 73.8%
3279228 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.59 45.0 3.27e-01 86.2% 68.1%
3228465 604.4.1.0 alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP 0.59 47.0 4.10e-01 90.8% 89.5%
3714092 3542.1.1.3 alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B 0.58 51.0 3.35e-01 98.5% 76.8%
3595069 604.1.1.199 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26165 0.57 47.0 4.65e-01 98.5% 85.7%
4024467 3871.1.1.1 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.57 39.0 3.06e-01 72.3% 64.1%
5001382 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.57 49.0 3.25e-01 96.9% 96.5%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.56 39.0 3.53e-01 73.8% 85.3%
3505951 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 47.0 3.94e-01 100.0% 62.4%
185069 632.3.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › Paramyx_P_V_C 0.56 34.0 3.85e-01 70.8% 81.2%
3519620 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.56 44.0 3.78e-01 89.2% 89.1%
3837935 4973.1.1.0 alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core 0.55 44.0 4.55e-01 100.0% 100.0%
4943903 2004.1.1.186 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.55 46.0 2.68e-01 100.0% 26.5%
4111221 3413.1.1.1 alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD 0.53 44.0 3.83e-01 90.8% 85.0%
3593287 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.53 38.0 3.04e-01 75.4% 74.6%
4586835 101.1.1.36 alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.51 40.0 4.00e-01 87.7% 89.2%