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JF974315.1__AGN38677.1__RHYG_00008__00008

Bact-Vir

JF974315.1__AGN38677.1__RHYG_00008__00008

Identity

Accession:
JF974315 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RR1-B

TaxID: 929834

Cluster

View cluster (68 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-168
PDB
Domain cluster: rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05621.18 best TniB 34.9 1.60e-08 99.4% 58.2%
PF13401.13 AAA_22 53.3 5.10e-14 80.6% 93.8%
D2 high residues 174-251
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jqjD03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.81 61.0 5.88e-01 100.0% 72.1%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.74 56.0 5.71e-01 94.9% 82.9%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 53.0 5.48e-01 96.2% 94.4%
4a3vB01 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 53.0 5.51e-01 97.4% 93.1%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.65 50.0 5.22e-01 87.2% 91.7%
4d81A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 53.0 5.03e-01 92.3% 90.4%
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 50.0 4.98e-01 97.4% 97.6%
6b5cA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 51.0 4.95e-01 98.7% 93.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3387896 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 61.0 6.42e-01 97.4% 97.1%
4963759 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.76 62.0 6.31e-01 93.6% 92.0%
5011845 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 57.0 5.87e-01 94.9% 85.3%
5051569 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 60.0 6.14e-01 94.9% 93.3%
4045986 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 61.0 6.22e-01 98.7% 97.3%
4454488 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 61.0 5.99e-01 94.9% 88.2%
4957062 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 61.0 5.83e-01 98.7% 87.8%
4026670 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.68 54.0 5.30e-01 97.4% 81.2%
4019514 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 57.0 5.16e-01 92.3% 86.7%
3250030 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.68 52.0 5.33e-01 96.2% 88.0%
3734971 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 53.0 5.21e-01 96.2% 80.0%
3596693 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.67 54.0 5.47e-01 98.7% 92.0%
3300054 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 52.0 5.35e-01 96.2% 89.3%
4672223 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.67 54.0 5.52e-01 98.7% 92.0%
4929924 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 54.0 5.31e-01 96.2% 83.5%
3619127 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 53.0 5.21e-01 98.7% 82.4%
4327043 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 53.0 5.34e-01 98.7% 87.5%
3959619 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 54.0 5.14e-01 92.3% 77.9%
4932596 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 54.0 5.27e-01 96.2% 83.5%
4947750 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.66 53.0 4.97e-01 91.0% 72.0%
4943796 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 54.0 5.41e-01 92.3% 90.0%
4970089 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 54.0 5.02e-01 92.3% 73.0%
1167753 148.1.3.6 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.65 54.0 5.05e-01 92.3% 80.4%
4395479 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.65 54.0 5.11e-01 94.9% 75.8%
5070245 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.65 53.0 5.13e-01 92.3% 81.1%
4947892 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 52.0 4.89e-01 92.3% 91.6%
3301182 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.62 51.0 5.25e-01 97.4% 97.3%
3600972 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 52.0 5.12e-01 94.9% 91.8%
4014099 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 46.0 4.31e-01 96.2% 66.3%
3797698 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.54 41.0 3.64e-01 83.3% 95.8%
3715749 2003.1.5.63 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CARME 0.53 37.0 2.49e-01 75.6% 51.7%