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JF974315.1__AGN38703.1__RHYG_00034__00034
Bact-VirJF974315.1__AGN38703.1__RHYG_00034__00034
Identity
- Accession:
- JF974315 ↗
- Kingdom:
- phage
Quality
76.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-56
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.60 | 45.0 | 3.28e-01 | 89.1% | 95.3% |
| 4e8dA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 39.0 | 2.77e-01 | 73.9% | 39.7% |
| 3psfA04 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.56 | 42.0 | 3.05e-01 | 91.3% | 43.3% |
| 4ktwA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 43.0 | 3.14e-01 | 95.7% | 54.4% |
| 5f29B00 | 3.30.70.1450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain | 0.54 | 41.0 | 3.70e-01 | 89.1% | 77.5% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.34e-01 | 100.0% | 92.4% |
| 2vgnA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.53 | 39.0 | 3.05e-01 | 91.3% | 56.7% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 36.0 | 2.50e-01 | 73.9% | 31.7% |
| 3sftA00 | 3.40.50.180 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain | 0.51 | 35.0 | 2.49e-01 | 78.3% | 87.8% |
| 4uwmA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 35.0 | 2.15e-01 | 76.1% | 38.7% |
| 3s24A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 37.0 | 3.12e-01 | 87.0% | 94.7% |
| 7tm7B01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.51 | 40.0 | 2.34e-01 | 93.5% | 24.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5015232 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 67.0 | 6.37e-01 | 100.0% | 78.2% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 65.0 | 6.28e-01 | 100.0% | 81.1% |
| 4939413 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.78 | 68.0 | 6.70e-01 | 100.0% | 94.0% |
| 5000438 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 62.0 | 5.46e-01 | 100.0% | 60.0% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.74 | 58.0 | 5.95e-01 | 100.0% | 95.5% |
| 5069643 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.72 | 60.0 | 5.75e-01 | 100.0% | 83.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.72 | 56.0 | 5.70e-01 | 100.0% | 93.3% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.71 | 53.0 | 5.43e-01 | 100.0% | 86.7% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.71 | 54.0 | 5.51e-01 | 100.0% | 91.1% |
| 4956745 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 57.0 | 5.60e-01 | 100.0% | 88.0% |
| 4944185 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 56.0 | 5.08e-01 | 100.0% | 66.2% |
| 5055750 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 56.0 | 5.50e-01 | 100.0% | 88.0% |
| 5044096 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 53.0 | 5.30e-01 | 97.8% | 86.0% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.67 | 52.0 | 5.29e-01 | 97.8% | 93.3% |
| 4641420 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.65 | 51.0 | 4.24e-01 | 100.0% | 47.8% |
| 5061797 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 43.0 | 4.40e-01 | 91.3% | 92.5% |
| 5038458 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.60 | 46.0 | 4.55e-01 | 93.5% | 92.0% |
| 3578203 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.59 | 45.0 | 3.27e-01 | 89.1% | 88.7% |
| 3629354 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.57 | 43.0 | 3.32e-01 | 89.1% | 62.4% |
| 5054938 | 101.1.2.271 ↗ | alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC | 0.56 | 43.0 | 3.19e-01 | 84.8% | 38.7% |
| 3583046 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 36.0 | 3.50e-01 | 71.7% | 87.3% |
| 5047328 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.54 | 37.0 | 2.31e-01 | 76.1% | 41.0% |
| 3593967 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 40.0 | 3.19e-01 | 100.0% | 75.0% |
| 3883438 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.51 | 39.0 | 2.61e-01 | 91.3% | 75.5% |
| 3614289 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 35.0 | 2.09e-01 | 76.1% | 13.5% |
| 5081588 | 2484.1.1.80 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HypF_C | 0.51 | 38.0 | 3.15e-01 | 91.3% | 75.0% |
| 3396311 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 37.0 | 2.61e-01 | 87.0% | 44.4% |
| 3216685 | 11.1.5.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box | 0.50 | 37.0 | 2.58e-01 | 87.0% | 87.9% |