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JF974315.1__AGN38704.1__RHYG_00035__00035

Bact-Vir

JF974315.1__AGN38704.1__RHYG_00035__00035

Identity

Accession:
JF974315 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-312
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04984.20 best Phage_sheath_1 58.8 8.60e-16 63.2% 89.9%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ba2A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.74 34.0 5.07e-01 90.5% 98.4%
4rxmA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.73 34.0 4.95e-01 90.9% 96.1%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 33.0 4.36e-01 89.8% 81.8%
5hsgA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 33.0 4.33e-01 89.8% 80.6%
4ry8C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.68 33.0 4.29e-01 89.8% 78.9%
2rjoA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 32.0 4.09e-01 89.8% 74.0%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 39.0 4.99e-01 94.7% 98.8%
1bqgA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.63 37.0 3.89e-01 95.8% 62.3%
3m9wA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 33.0 4.29e-01 97.9% 88.3%
2xblD00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.61 33.0 3.91e-01 75.8% 75.4%
3i6iA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 39.0 4.79e-01 94.0% 99.5%
5uqiA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 30.0 3.66e-01 76.1% 70.2%
3fxaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.60 31.0 3.65e-01 76.5% 69.6%
2yvaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.59 33.0 3.94e-01 75.8% 77.7%
4qgrA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 35.0 3.74e-01 86.7% 66.9%
1rqeA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 39.0 3.93e-01 95.8% 65.5%
4ocaA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.58 34.0 3.77e-01 87.7% 68.8%
1losA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 35.0 3.95e-01 96.1% 76.9%
3ve9A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 32.0 3.74e-01 97.9% 74.0%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.57 39.0 4.12e-01 95.8% 75.1%
1o69A01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.57 35.0 3.82e-01 86.7% 73.0%
2czdB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 33.0 3.79e-01 96.1% 75.8%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.55 34.0 3.43e-01 95.4% 57.7%
1tpzA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 34.0 4.21e-01 99.6% 98.3%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 42.0 4.66e-01 81.1% 97.8%
3uyiA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.55 38.0 3.78e-01 97.5% 66.2%
6ki3A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.54 40.0 3.98e-01 96.1% 72.5%
4f1jA00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.53 36.0 4.24e-01 76.8% 96.5%
7exbA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.53 38.0 3.91e-01 96.1% 75.6%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 42.0 4.31e-01 81.4% 90.7%
7fc0E01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.51 37.0 3.89e-01 95.1% 79.9%
1pyfA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.50 37.0 3.66e-01 95.4% 69.1%
5supC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 28.0 3.24e-01 83.2% 71.8%
7dz9A01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.50 36.0 3.78e-01 95.4% 80.2%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 34.0 3.61e-01 94.7% 75.3%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978226 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.98 88.0 8.90e-01 97.2% 92.1%
3944167 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.94 80.0 8.29e-01 96.8% 91.9%
1518917 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.93 80.0 8.25e-01 97.9% 91.2%
4995822 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.91 76.0 8.06e-01 98.6% 95.3%
5004680 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.90 78.0 7.99e-01 98.2% 92.0%
2468451 2499.2.1.1 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 0.89 66.0 7.56e-01 98.2% 98.2%
4889792 2499.2.1.0 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.88 66.0 7.57e-01 98.9% 99.1%
2468538 2499.2.1.0 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.82 71.0 7.55e-01 98.6% 98.4%
2832219 2499.2.1.0 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 0.80 75.0 6.84e-01 97.2% 94.8%
4888782 2499.2.1.2 a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N 0.76 68.0 6.89e-01 91.2% 93.2%
3330118 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.73 33.0 4.80e-01 76.8% 91.5%
None 0.72 33.0 4.83e-01 99.6% 96.0%
3802816 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.71 33.0 4.49e-01 77.2% 83.4%
4984677 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.69 29.0 4.22e-01 76.5% 84.6%
5077102 2007.1.14.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA 0.66 29.0 4.11e-01 76.5% 85.4%
4131482 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.66 37.0 4.85e-01 76.8% 96.2%
4954306 2007.3.1.6 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA_2 0.65 37.0 4.73e-01 76.8% 93.9%
3371703 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.65 37.0 4.62e-01 97.9% 89.7%
None 0.60 33.0 3.97e-01 76.1% 77.4%
4532780 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.59 35.0 3.98e-01 96.1% 76.2%
3003998 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.58 36.0 3.97e-01 89.5% 75.0%
4996876 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.57 28.0 3.97e-01 97.2% 98.5%
147501 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.56 33.0 3.71e-01 95.4% 72.9%
3495116 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.54 35.0 3.67e-01 95.8% 68.4%
3773044 2004.1.1.122 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IIGP 0.54 37.0 2.53e-01 94.0% 19.0%
5035349 2002.1.1.1 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large 0.54 38.0 3.71e-01 96.1% 64.8%
4942923 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.54 35.0 4.01e-01 94.7% 87.1%
3507721 2004.1.1.163 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.53 32.0 4.10e-01 77.9% 100.0%
3638250 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.53 36.0 3.60e-01 95.4% 66.7%
4629816 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.52 38.0 3.80e-01 95.8% 72.1%
2440205 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.51 34.0 3.82e-01 94.7% 83.6%
3222918 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 26.0 3.38e-01 80.7% 87.3%
3994515 2004.1.1.163 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.51 35.0 4.02e-01 77.5% 95.1%
D2 medium residues 342-419
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 41.0 3.88e-01 70.5% 49.0%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.67 43.0 3.92e-01 70.5% 49.1%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 41.0 3.86e-01 70.5% 51.0%
1amuA04 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.62 37.0 3.48e-01 70.5% 45.8%
4dn2A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.61 43.0 3.20e-01 73.1% 42.4%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 3.61e-01 70.5% 49.5%
1gupB01 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.59 40.0 3.14e-01 70.5% 34.1%
1yj7D02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.57 34.0 3.29e-01 73.1% 52.9%
4n2oA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 39.0 2.93e-01 70.5% 29.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.57 39.0 3.75e-01 71.8% 64.8%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 3.40e-01 70.5% 49.1%
6h1bA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.53 33.0 3.12e-01 71.8% 48.0%
4h5uA00 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.52 38.0 2.61e-01 78.2% 90.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980756 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.95 79.0 6.96e-01 85.9% 64.8%
3949098 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.94 87.0 7.53e-01 96.2% 68.2%
2468488 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.88 73.0 6.34e-01 87.2% 68.5%
4957559 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.87 67.0 6.08e-01 80.8% 69.0%
2471639 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.84 72.0 6.28e-01 91.0% 69.4%
2468539 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.83 74.0 6.43e-01 96.2% 70.4%
4888785 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.79 64.0 6.25e-01 87.2% 89.5%
1518918 283.2.1.2 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C 0.76 66.0 5.81e-01 93.6% 65.2%
4963974 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.67 46.0 2.95e-01 70.5% 17.6%
1144613 327.17.1.3 a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_M 0.63 43.0 3.76e-01 71.8% 52.5%
2907089 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.61 40.0 3.64e-01 71.8% 48.2%
4386717 327.13.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.59 41.0 3.60e-01 71.8% 48.7%
4964908 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.58 40.0 3.09e-01 73.1% 52.8%
1125348 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.57 39.0 2.93e-01 70.5% 29.2%
3934203 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.57 41.0 2.81e-01 76.9% 91.7%
3291436 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.57 39.0 3.44e-01 73.1% 50.4%
3507049 327.3.1.0 a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain 0.56 38.0 3.56e-01 70.5% 77.0%
4053920 327.13.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF 0.52 36.0 3.20e-01 74.4% 50.0%
3735506 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 35.0 2.55e-01 71.8% 29.2%