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JGI24723J26617_10000007_prodigal-single.1__X__X__00113
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00113
Identity
- Kingdom:
- phage
Quality
76.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-96
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4939684_prodigal-single.1__X__X__00270__D3-85
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.67 | 33.0 | 4.21e-01 | 94.7% | 81.8% |
| 5i7pA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.66 | 27.0 | 3.68e-01 | 73.4% | 72.9% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 29.0 | 2.96e-01 | 73.4% | 57.0% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3383054 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.64 | 24.0 | 3.51e-01 | 70.2% | 82.9% |
| 3675341 | 4.1.1.175 ↗ | beta barrels › SH3 › SH3 › SH3 › MSSS | 0.62 | 26.0 | 3.35e-01 | 73.4% | 65.5% |
| 3356654 | 221.1.2.20 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e | 0.61 | 27.0 | 3.43e-01 | 74.5% | 67.3% |
| 3520979 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.54 | 27.0 | 3.43e-01 | 85.1% | 81.8% |
| 4350703 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.53 | 38.0 | 3.62e-01 | 74.5% | 99.1% |