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JGI24723J26617_10000007_prodigal-single.1__X__X__00129

Bact-Vir

JGI24723J26617_10000007_prodigal-single.1__X__X__00129

Identity

Kingdom:
phage

Quality

53.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-73
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mr8A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.67 51.0 4.72e-01 95.6% 63.3%
1wlmA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 52.0 4.59e-01 91.2% 59.2%
7tvyA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.64 53.0 4.49e-01 92.6% 62.1%
3eixA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.63 45.0 3.36e-01 76.5% 91.2%
1omvA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 48.0 4.55e-01 92.6% 67.4%
1eg3A04 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 49.0 4.66e-01 91.2% 85.4%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 47.0 4.42e-01 85.3% 66.7%
4mspB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.61 44.0 4.26e-01 75.0% 72.0%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.60 44.0 3.09e-01 80.9% 50.4%
5t0oA03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.60 44.0 3.95e-01 80.9% 87.1%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 47.0 3.68e-01 88.2% 43.1%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.60 46.0 3.39e-01 85.3% 53.1%
7pjdC01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 49.0 3.76e-01 94.1% 61.9%
3a8rA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 44.0 3.81e-01 91.2% 49.6%
1bi5A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 47.0 3.30e-01 92.6% 76.9%
3cs1A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 44.0 3.86e-01 86.8% 61.5%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.57 38.0 3.55e-01 76.5% 54.0%
2a7oA00 1.10.1740.100 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain 0.57 49.0 4.39e-01 100.0% 88.0%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 45.0 3.56e-01 92.6% 42.1%
2q8pA02 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.55 45.0 3.48e-01 97.1% 95.9%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.30e-01 92.6% 48.4%
2r2iA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 43.0 3.92e-01 92.6% 78.4%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 38.0 3.70e-01 80.9% 69.3%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 39.0 3.50e-01 86.8% 57.6%
1s1eA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 43.0 3.29e-01 100.0% 97.8%
3c8zA02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.51 35.0 3.38e-01 73.5% 100.0%
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.50 35.0 3.29e-01 76.5% 78.0%
1iufA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 32.0 3.34e-01 72.1% 70.3%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3572904 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.84 62.0 5.88e-01 79.4% 66.3%
3573862 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 62.0 4.34e-01 91.2% 27.1%
3338016 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.79 59.0 5.17e-01 82.4% 54.0%
3330762 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.76 59.0 4.94e-01 95.6% 49.6%
4991136 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.70 53.0 5.64e-01 82.4% 93.3%
3878587 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 56.0 5.28e-01 91.2% 74.1%
3719346 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.68 51.0 4.73e-01 80.9% 63.5%
3560654 108.1.1.20 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_like 0.68 57.0 4.36e-01 92.6% 41.3%
4028196 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.67 52.0 4.86e-01 91.2% 68.2%
4025044 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 50.0 4.59e-01 80.9% 70.0%
3853771 108.1.1.2 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1,S_100 0.65 51.0 4.80e-01 91.2% 69.4%
1589463 3009.1.1.0 ↗ alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.65 48.0 4.82e-01 80.9% 82.1%
3506141 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 48.0 4.84e-01 86.8% 81.4%
3671688 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 50.0 5.05e-01 88.2% 87.1%
3995291 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.64 48.0 4.91e-01 80.9% 89.2%
3913563 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 48.0 4.53e-01 83.8% 67.1%
3569524 108.1.1.48 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_9 0.63 51.0 4.87e-01 91.2% 78.8%
4000007 108.1.1.146 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30344 0.62 50.0 4.57e-01 91.2% 66.3%
4097210 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.62 43.0 4.65e-01 85.3% 92.7%
2773953 108.1.1.67 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_PLCG2 0.61 46.0 4.36e-01 83.8% 68.6%
4221363 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.61 43.0 4.28e-01 86.8% 72.9%
4352200 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.61 42.0 4.25e-01 75.0% 71.4%
4808037 3838.1.1.3 ↗ alpha arrays › SidM Rab1-activation domain › SidM Rab1-activation domain › SidM Rab1-activation domain › SidM_N 0.61 46.0 3.80e-01 83.8% 79.8%
3491348 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 43.0 4.00e-01 75.0% 69.4%
3580220 108.1.1.103 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6, EF-hand_7, EF-hand_8 0.59 47.0 3.48e-01 91.2% 32.8%
3518002 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.59 50.0 3.31e-01 100.0% 47.5%
3252984 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 48.0 4.41e-01 91.2% 68.9%
3519803 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 45.0 3.37e-01 85.3% 53.7%
3455201 108.1.1.113 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_6 0.59 43.0 4.28e-01 91.2% 74.7%
3802089 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.59 47.0 4.51e-01 91.2% 95.0%
4873396 7581.1.1.24 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Chal_sti_synt_N, ACP_syn_III 0.58 47.0 3.30e-01 92.6% 73.8%
3393434 108.1.1.123 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.58 47.0 4.49e-01 94.1% 98.8%
3594791 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 44.0 4.06e-01 91.2% 63.3%
4994660 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.06e-01 91.2% 79.1%
3391943 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.57 42.0 3.83e-01 80.9% 60.0%
3443038 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.56 38.0 2.72e-01 77.9% 21.3%
3896881 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.56 43.0 4.02e-01 91.2% 66.7%
4988228 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.55 47.0 3.46e-01 97.1% 66.2%
4946174 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 4.17e-01 95.6% 72.2%
3628284 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.55 44.0 4.00e-01 94.1% 94.0%
3477597 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 42.0 3.89e-01 85.3% 65.6%
4994527 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 38.0 3.64e-01 75.0% 73.8%
5002286 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.32e-01 83.8% 80.0%
3604896 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.53 38.0 3.72e-01 80.9% 85.0%
3322779 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 2.72e-01 98.5% 46.1%
D2 medium residues 78-161
PDB
D3 medium residues 162-238
PDB