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JGI24723J26617_10000007_prodigal-single.1__X__X__00183
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00183
Identity
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-92
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2952615_prodigal-single.1__X__X__00164__D63-116
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.74 | 53.0 | 5.34e-01 | 75.8% | 90.3% |
| 3u1wA01 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.69 | 51.0 | 3.70e-01 | 80.6% | 60.1% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.66 | 46.0 | 4.03e-01 | 74.2% | 59.2% |
| 7nn3B01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.66 | 54.0 | 3.42e-01 | 91.9% | 41.5% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 56.0 | 4.65e-01 | 100.0% | 92.2% |
| 5cfvA01 | 3.30.700.10 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin | 0.64 | 46.0 | 3.87e-01 | 77.4% | 61.7% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 55.0 | 4.64e-01 | 100.0% | 78.5% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.63 | 54.0 | 4.54e-01 | 100.0% | 81.6% |
| 2giaB00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.63 | 54.0 | 4.19e-01 | 100.0% | 84.9% |
| 3tdgA01 | 3.10.450.520 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 44.0 | 4.34e-01 | 75.8% | 69.7% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.63 | 51.0 | 4.18e-01 | 100.0% | 80.1% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.63 | 54.0 | 4.62e-01 | 100.0% | 95.2% |
| 2bklA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 46.0 | 2.93e-01 | 82.3% | 22.8% |
| 1llnA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.61 | 50.0 | 3.80e-01 | 100.0% | 70.3% |
| 2fblB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.61 | 44.0 | 3.32e-01 | 77.4% | 83.8% |
| 2it9A00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.59 | 47.0 | 3.95e-01 | 95.2% | 99.2% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.58 | 36.0 | 4.07e-01 | 87.1% | 88.6% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.56 | 41.0 | 3.34e-01 | 88.7% | 41.0% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 38.0 | 3.27e-01 | 72.6% | 48.6% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 33.0 | 3.72e-01 | 82.3% | 80.0% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.55 | 40.0 | 3.94e-01 | 79.0% | 86.4% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 38.0 | 3.70e-01 | 74.2% | 77.5% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 43.0 | 4.09e-01 | 93.5% | 81.3% |
| 2f20A00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.53 | 38.0 | 2.65e-01 | 79.0% | 56.7% |
| 1khiA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.50e-01 | 74.2% | 81.3% |
| 6cz7A01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.52 | 37.0 | 3.80e-01 | 100.0% | 79.0% |
| 1hkgA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.32e-01 | 90.3% | 87.7% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 45.0 | 2.81e-01 | 100.0% | 25.2% |
| 3lm3A02 | 3.30.1120.110 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 42.0 | 3.69e-01 | 100.0% | 83.2% |
| 2ozoA04 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 43.0 | 3.85e-01 | 93.5% | 85.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.51 | 45.0 | 2.87e-01 | 100.0% | 20.9% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.51 | 30.0 | 2.98e-01 | 93.5% | 50.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4069753 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.67 | 57.0 | 4.54e-01 | 100.0% | 80.7% |
| 4117020 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 38.0 | 3.88e-01 | 74.2% | 58.3% |
| 3166548 | 220.1.1.20 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH | 0.66 | 57.0 | 4.61e-01 | 100.0% | 84.8% |
| 3967506 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.64 | 45.0 | 2.98e-01 | 74.2% | 53.8% |
| 3471615 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.64 | 56.0 | 4.60e-01 | 100.0% | 87.0% |
| 5012156 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.63 | 46.0 | 4.07e-01 | 77.4% | 53.3% |
| 3484139 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 52.0 | 4.32e-01 | 98.4% | 72.8% |
| 3248039 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 47.0 | 4.00e-01 | 79.0% | 85.0% |
| 4492101 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.63 | 44.0 | 3.89e-01 | 72.6% | 83.3% |
| 185116 | 295.1.1.2 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA | 0.63 | 51.0 | 4.17e-01 | 100.0% | 79.6% |
| 4966836 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 44.0 | 4.58e-01 | 74.2% | 100.0% |
| 4544637 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.61 | 41.0 | 3.68e-01 | 71.0% | 47.3% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 52.0 | 5.03e-01 | 98.4% | 97.1% |
| 3541065 | 5.1.4.13 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP | 0.60 | 53.0 | 3.16e-01 | 100.0% | 24.1% |
| 5001101 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.60 | 43.0 | 4.42e-01 | 88.7% | 80.0% |
| 3508197 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 51.0 | 3.25e-01 | 100.0% | 32.5% |
| 3186839 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 52.0 | 3.22e-01 | 100.0% | 24.1% |
| 3510980 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.59 | 42.0 | 2.72e-01 | 75.8% | 92.0% |
| 4028683 | 3504.3.1.0 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain | 0.59 | 41.0 | 2.98e-01 | 95.2% | 25.6% |
| 4025894 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 37.0 | 3.05e-01 | 88.7% | 35.8% |
| 3673087 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.57 | 49.0 | 3.59e-01 | 100.0% | 58.3% |
| 1153941 | 243.4.1.2 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbG_N | 0.57 | 49.0 | 4.30e-01 | 100.0% | 66.7% |
| 5041294 | 5.1.4.665 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_2 | 0.57 | 48.0 | 3.15e-01 | 100.0% | 26.6% |
| 4945471 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 43.0 | 4.34e-01 | 90.3% | 92.3% |
| 3830081 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.56 | 48.0 | 3.09e-01 | 100.0% | 20.0% |
| 3624852 | 883.1.1.10 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L | 0.56 | 45.0 | 3.39e-01 | 98.4% | 78.4% |
| 3539661 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.55 | 46.0 | 3.33e-01 | 100.0% | 77.6% |
| 3734923 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.55 | 38.0 | 2.41e-01 | 74.2% | 93.2% |
| 5047657 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 39.0 | 4.05e-01 | 75.8% | 100.0% |
| 3951937 | 330.8.1.1 ↗ | a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like | 0.54 | 38.0 | 3.38e-01 | 72.6% | 62.9% |
| 3289794 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.53 | 40.0 | 3.32e-01 | 80.6% | 52.7% |
| 4950038 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.53 | 38.0 | 3.57e-01 | 77.4% | 72.5% |
| 5026400 | 1001.1.1.1 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Molybdop_Fe4S4 | 0.52 | 38.0 | 3.76e-01 | 100.0% | 75.4% |
| 4440404 | 4325.1.1.15 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 | 0.52 | 39.0 | 3.18e-01 | 91.9% | 42.5% |
| 3317787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 36.0 | 3.90e-01 | 87.1% | 98.0% |