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JGI24723J26617_10000007_prodigal-single.1__X__X__00210
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00210
Identity
- Kingdom:
- phage
Quality
61.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-68
D2
medium
residues 69-128
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.82 | 66.0 | 5.50e-01 | 100.0% | 51.5% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.69 | 52.0 | 4.07e-01 | 80.0% | 38.4% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.69 | 50.0 | 3.98e-01 | 78.3% | 37.8% |
| 3b5iA02 | 1.10.1200.220 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.69 | 52.0 | 4.52e-01 | 88.3% | 52.6% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.68 | 58.0 | 5.58e-01 | 95.0% | 94.1% |
| 5xnyA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.64 | 47.0 | 3.93e-01 | 86.7% | 44.9% |
| 2kzcA00 | 1.10.790.20 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Domain of unknown function DUF1476 | 0.62 | 47.0 | 4.26e-01 | 85.0% | 100.0% |
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.61 | 53.0 | 4.81e-01 | 100.0% | 76.5% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 49.0 | 4.09e-01 | 86.7% | 70.3% |
| 1w36F02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 52.0 | 4.37e-01 | 95.0% | 59.0% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 41.0 | 3.96e-01 | 75.0% | 88.6% |
| 4pxoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 47.0 | 3.72e-01 | 91.7% | 42.7% |
| 2riqA01 | 1.10.20.130 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.58 | 43.0 | 4.18e-01 | 81.7% | 78.8% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.99e-01 | 76.7% | 69.7% |
| 5xtck00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 48.0 | 4.09e-01 | 98.3% | 59.8% |
| 6qumQ00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 44.0 | 4.21e-01 | 96.7% | 77.0% |
| 4c3sA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.54 | 40.0 | 2.74e-01 | 86.7% | 18.9% |
| 5hxgB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.54 | 38.0 | 3.75e-01 | 76.7% | 95.4% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 40.0 | 3.74e-01 | 88.3% | 70.3% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.50 | 41.0 | 3.05e-01 | 100.0% | 67.7% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.50 | 34.0 | 3.04e-01 | 80.0% | 43.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.81 | 73.0 | 6.86e-01 | 100.0% | 82.9% |
| 3762209 | 604.4.1.0 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP | 0.78 | 70.0 | 6.06e-01 | 98.3% | 81.1% |
| 3948230 | 4120.1.1.2 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › DUF1158 | 0.72 | 62.0 | 5.89e-01 | 100.0% | 81.4% |
| 3190754 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.71 | 53.0 | 5.07e-01 | 80.0% | 78.6% |
| 4981035 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.71 | 61.0 | 5.98e-01 | 98.3% | 87.7% |
| 3396463 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.69 | 48.0 | 4.03e-01 | 80.0% | 44.0% |
| 3452232 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 59.0 | 4.07e-01 | 100.0% | 45.6% |
| 3989934 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 58.0 | 5.68e-01 | 100.0% | 98.5% |
| 3994468 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.62 | 43.0 | 4.08e-01 | 71.7% | 78.6% |
| 3589375 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.62 | 55.0 | 3.27e-01 | 98.3% | 16.3% |
| 166468 | 191.1.1.11 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_7 | 0.60 | 51.0 | 4.01e-01 | 96.7% | 93.8% |
| 3199604 | 102.1.2.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase | 0.60 | 48.0 | 4.04e-01 | 91.7% | 50.9% |
| 3214887 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 40.0 | 4.18e-01 | 86.7% | 80.0% |
| 3749766 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.58 | 48.0 | 4.06e-01 | 98.3% | 67.3% |
| 3864752 | 376.1.1.113 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Pex2_Pex12 | 0.58 | 48.0 | 4.10e-01 | 98.3% | 71.4% |
| 4518770 | 7023.1.1.2 ↗ | alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › Pex2_Pex12 | 0.58 | 47.0 | 3.97e-01 | 98.3% | 65.2% |
| 3668213 | 109.59.1.13 ↗ | alpha superhelices › Repetitive alpha hairpins › Intraflagellar transport protein 80 (IFT80) C-terminal domain › Intraflagellar transport protein 80 (IFT80) C-terminal domain › E_motif | 0.56 | 33.0 | 3.30e-01 | 78.3% | 52.3% |
| 5066226 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.53 | 37.0 | 3.64e-01 | 75.0% | 76.9% |