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JGI24723J26617_10000007_prodigal-single.1__X__X__00226
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00226
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-123
Domain cluster:
rep: IMGVR_UViG_3300011013_002706-3300011013-Ga0114934_1000445217__D3-119
D2
high
residues 129-186
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mp6A05 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 49.0 | 4.78e-01 | 98.3% | 77.8% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 48.0 | 4.07e-01 | 98.3% | 50.0% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 47.0 | 4.55e-01 | 98.3% | 95.5% |
| 2ox7A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.56 | 42.0 | 3.98e-01 | 100.0% | 68.1% |
| 1xezA01 | 3.30.110.130 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hemolytic toxin, N-terminal domain | 0.56 | 38.0 | 3.43e-01 | 70.7% | 74.1% |
| 3p02A02 | 2.40.128.440 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 | 0.54 | 43.0 | 3.38e-01 | 100.0% | 88.2% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 45.0 | 3.50e-01 | 100.0% | 61.0% |
| 3oymA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 42.0 | 4.02e-01 | 98.3% | 78.6% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.52 | 41.0 | 3.89e-01 | 94.8% | 96.1% |
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 40.0 | 3.93e-01 | 96.6% | 80.9% |
| 3u50C01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 34.0 | 2.82e-01 | 74.1% | 33.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4646593 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.64 | 54.0 | 4.07e-01 | 100.0% | 39.3% |
| 5002755 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.62 | 45.0 | 4.92e-01 | 94.8% | 100.0% |
| 3397846 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 46.0 | 4.68e-01 | 98.3% | 87.3% |
| 4259070 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.60 | 43.0 | 4.56e-01 | 77.6% | 88.0% |
| 4607576 | 4.1.1.370 ↗ | beta barrels › SH3 › SH3 › SH3 › PF28261 | 0.59 | 48.0 | 4.62e-01 | 94.8% | 87.1% |
| 3924975 | 4.1.1.377 ↗ | beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like | 0.59 | 50.0 | 4.55e-01 | 100.0% | 70.0% |
| 3300116 | 220.1.1.7 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS | 0.59 | 50.0 | 4.19e-01 | 98.3% | 69.5% |
| 5042986 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 48.0 | 4.75e-01 | 100.0% | 88.3% |
| 4983912 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.58 | 51.0 | 3.00e-01 | 100.0% | 16.8% |
| 1839931 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.57 | 48.0 | 3.74e-01 | 100.0% | 92.3% |
| 3927795 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 48.0 | 4.78e-01 | 98.3% | 93.3% |
| 3291157 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.57 | 50.0 | 3.74e-01 | 100.0% | 40.0% |
| 3556601 | 4.1.1.304 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O | 0.57 | 48.0 | 4.69e-01 | 98.3% | 86.2% |
| 5052189 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 39.0 | 2.88e-01 | 74.1% | 61.3% |
| 3584391 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.56 | 41.0 | 3.59e-01 | 81.0% | 52.6% |
| 4007999 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.55 | 42.0 | 3.40e-01 | 100.0% | 38.5% |
| 3326132 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 3.94e-01 | 98.3% | 73.8% |
| 3480564 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 46.0 | 3.54e-01 | 98.3% | 84.3% |
| 3502388 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 41.0 | 3.90e-01 | 100.0% | 69.3% |
| 3584249 | 220.1.1.132 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C | 0.54 | 44.0 | 3.71e-01 | 96.6% | 76.4% |
| 3964422 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 41.0 | 3.14e-01 | 100.0% | 33.1% |
| 3781209 | 4.1.1.308 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31073 | 0.53 | 42.0 | 3.68e-01 | 98.3% | 56.0% |
| 5064403 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 39.0 | 3.76e-01 | 93.1% | 69.3% |
| 3589154 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.52 | 43.0 | 3.29e-01 | 98.3% | 48.7% |
| 3774381 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 34.0 | 3.30e-01 | 74.1% | 60.0% |