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JGI24723J26617_10000007_prodigal-single.1__X__X__00440
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00440
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-86
Domain cluster:
rep: NC_015157.1__YP_004251104.1__ViPhICP1_gp163__00163__D11-68
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.71 | 52.0 | 4.02e-01 | 77.9% | 84.3% |
| 4wp3C00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.71 | 49.0 | 3.64e-01 | 71.4% | 29.9% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.70 | 49.0 | 3.66e-01 | 72.7% | 61.6% |
| 2qv6A01 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.70 | 47.0 | 3.98e-01 | 71.4% | 42.2% |
| 3ui3A02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 48.0 | 4.37e-01 | 71.4% | 59.2% |
| 2qv6B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.68 | 47.0 | 3.95e-01 | 71.4% | 44.3% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.65 | 45.0 | 4.18e-01 | 70.1% | 74.5% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 47.0 | 3.93e-01 | 87.0% | 42.9% |
| 3mr7A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.65 | 48.0 | 3.76e-01 | 80.5% | 86.1% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 44.0 | 4.05e-01 | 83.1% | 53.3% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.64 | 46.0 | 3.64e-01 | 76.6% | 48.8% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.64 | 47.0 | 3.17e-01 | 77.9% | 47.1% |
| 5llwA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.63 | 42.0 | 3.50e-01 | 70.1% | 38.7% |
| 6eibD00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.62 | 41.0 | 3.34e-01 | 71.4% | 34.6% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.67e-01 | 80.5% | 41.1% |
| 3v3kD00 | 1.20.1260.90 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.61 | 42.0 | 3.30e-01 | 72.7% | 33.5% |
| 1q8iA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.61 | 43.0 | 3.20e-01 | 75.3% | 47.4% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.60 | 40.0 | 3.75e-01 | 71.4% | 55.3% |
| 1ewqA04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.60 | 42.0 | 3.56e-01 | 74.0% | 57.4% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 43.0 | 3.78e-01 | 75.3% | 68.1% |
| 2f2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 3.95e-01 | 77.9% | 61.5% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.59 | 40.0 | 3.37e-01 | 70.1% | 57.4% |
| 4qmfB01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.59 | 40.0 | 3.99e-01 | 71.4% | 87.8% |
| 2pb2B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 39.0 | 3.29e-01 | 72.7% | 41.5% |
| 4ammA00 | 3.40.366.10 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 | 0.57 | 40.0 | 2.58e-01 | 74.0% | 67.4% |
| 2zogA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 42.0 | 2.80e-01 | 77.9% | 81.9% |
| 3l09A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 36.0 | 3.56e-01 | 76.6% | 59.5% |
| 1dikA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.55 | 33.0 | 2.70e-01 | 79.2% | 30.1% |
| 2v8pA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.54 | 38.0 | 3.39e-01 | 74.0% | 73.9% |
| 5e1wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.11e-01 | 83.1% | 36.3% |
| 3mc6A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 37.0 | 3.20e-01 | 75.3% | 46.6% |
| 3zcoA00 | 1.10.10.2450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 35.0 | 3.10e-01 | 81.8% | 43.3% |
| 3pqkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.46e-01 | 76.6% | 59.6% |
| 2rghA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 36.0 | 2.58e-01 | 74.0% | 73.1% |
| 2ja9A02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 35.0 | 3.43e-01 | 71.4% | 65.5% |
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.50 | 39.0 | 2.90e-01 | 88.3% | 65.2% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032395 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.82 | 60.0 | 5.70e-01 | 79.2% | 65.6% |
| 3948634 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 58.0 | 5.38e-01 | 74.0% | 61.1% |
| 4034249 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.79 | 53.0 | 5.07e-01 | 72.7% | 60.0% |
| 4615793 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.77 | 50.0 | 4.80e-01 | 70.1% | 57.8% |
| 4034263 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.76 | 53.0 | 5.17e-01 | 74.0% | 65.9% |
| 3590622 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.76 | 59.0 | 5.32e-01 | 87.0% | 61.0% |
| 3590776 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.74 | 56.0 | 5.22e-01 | 79.2% | 66.3% |
| 4971836 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.73 | 48.0 | 4.28e-01 | 71.4% | 48.2% |
| 1681577 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.72 | 51.0 | 3.86e-01 | 72.7% | 55.8% |
| 3590781 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.72 | 51.0 | 4.87e-01 | 74.0% | 65.6% |
| 5041308 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.72 | 53.0 | 3.63e-01 | 79.2% | 69.3% |
| 3589866 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.72 | 49.0 | 4.75e-01 | 74.0% | 63.5% |
| 3943350 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.71 | 48.0 | 4.69e-01 | 74.0% | 63.5% |
| 3603883 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.69 | 47.0 | 3.90e-01 | 71.4% | 41.5% |
| 5043528 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.69 | 47.0 | 3.97e-01 | 71.4% | 45.0% |
| 4942685 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.67 | 47.0 | 2.87e-01 | 74.0% | 38.1% |
| 4419306 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.65 | 47.0 | 3.46e-01 | 76.6% | 53.3% |
| 4145731 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.64 | 44.0 | 3.88e-01 | 70.1% | 52.7% |
| 4598614 | 304.48.1.22 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III | 0.64 | 44.0 | 3.79e-01 | 71.4% | 45.8% |
| 4649222 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.63 | 46.0 | 3.95e-01 | 84.4% | 46.9% |
| 5067176 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.63 | 48.0 | 3.50e-01 | 80.5% | 58.1% |
| 4032391 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.62 | 42.0 | 4.10e-01 | 72.7% | 63.5% |
| 5579 | 306.8.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp | 0.60 | 40.0 | 3.75e-01 | 71.4% | 55.3% |
| 3559562 | 327.11.2.21 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_2nd | 0.60 | 40.0 | 4.07e-01 | 71.4% | 70.7% |
| 3604748 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 50.0 | 3.73e-01 | 100.0% | 67.0% |
| 5004792 | 304.1.1.0 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain | 0.59 | 41.0 | 3.52e-01 | 72.7% | 74.2% |
| 3745161 | 4323.1.1.2 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V-ATPase_C | 0.59 | 45.0 | 4.10e-01 | 81.8% | 66.0% |
| 1888715 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.58 | 45.0 | 3.74e-01 | 84.4% | 91.2% |
| 3759086 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.57 | 40.0 | 3.31e-01 | 74.0% | 55.2% |
| None | — | 0.56 | 45.0 | 2.99e-01 | 89.6% | 49.9% | |
| 3724974 | 101.1.2.519 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7791 | 0.55 | 44.0 | 3.46e-01 | 90.9% | 92.8% |
| 3403813 | 603.2.1.12 ↗ | alpha bundles › STAT-like › STAT › STAT › 7tm_7 | 0.55 | 40.0 | 2.63e-01 | 77.9% | 93.5% |
| 3547409 | 604.1.1.153 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 | 0.54 | 39.0 | 2.90e-01 | 75.3% | 33.0% |
| 3979431 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.54 | 40.0 | 3.36e-01 | 83.1% | 72.0% |
| 4029803 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 37.0 | 3.11e-01 | 77.9% | 42.3% |
| 3319155 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.53 | 46.0 | 3.21e-01 | 100.0% | 42.9% |
| 4996404 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 43.0 | 3.45e-01 | 96.1% | 45.3% |
| 3587282 | 142.1.1.10 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 | 0.53 | 32.0 | 3.35e-01 | 72.7% | 65.7% |
| 3290009 | 4107.1.1.1 ↗ | alpha arrays › Jann2411-like › Jann2411-like › Jann2411-like › ABATE,zf-CGNR | 0.53 | 39.0 | 3.04e-01 | 79.2% | 64.7% |
| 3934202 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.53 | 36.0 | 3.01e-01 | 71.4% | 37.9% |
| 4005987 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 36.0 | 3.10e-01 | 71.4% | 92.0% |
| 3744166 | 109.4.1.291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PUF_NOP9 | 0.52 | 45.0 | 2.70e-01 | 100.0% | 26.8% |
| 5077445 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 39.0 | 3.25e-01 | 85.7% | 68.0% |
| 4026519 | 3871.1.1.1 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN | 0.50 | 36.0 | 3.01e-01 | 75.3% | 100.0% |