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JGI24723J26617_10000007_prodigal-single.1__X__X__00514
Bact-VirJGI24723J26617_10000007_prodigal-single.1__X__X__00514
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-98
Domain cluster:
rep: Salt_Pond_R1_B_D2_MG_scaffold_4_prodigal-single.1__X__X__00174__D3-92
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bj1A02 | 3.40.50.12060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 45.0 | 3.87e-01 | 100.0% | 50.0% |
| 2b5eA02 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 36.0 | 3.61e-01 | 93.7% | 56.7% |
| 3fvyA03 | 3.30.70.2600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 34.0 | 3.80e-01 | 97.9% | 72.0% |
| 1wkvA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 51.0 | 4.04e-01 | 97.9% | 83.4% |
| 5eanA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 46.0 | 3.68e-01 | 89.5% | 86.0% |
| 2gzsA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 46.0 | 3.45e-01 | 88.4% | 95.2% |
| 6bogA05 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 45.0 | 3.55e-01 | 86.3% | 93.3% |
| 3v7nA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 50.0 | 3.86e-01 | 97.9% | 89.1% |
| 3dcmX00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.57 | 43.0 | 3.48e-01 | 81.1% | 77.7% |
| 2eyqA04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 3.10e-01 | 100.0% | 29.7% |
| 3ru6B00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 42.0 | 3.21e-01 | 81.1% | 92.8% |
| 3ho7A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 33.0 | 3.11e-01 | 98.9% | 49.2% |
| 7w0bA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 3.15e-01 | 100.0% | 36.2% |
| 3foeA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 24.0 | 2.73e-01 | 91.6% | 52.2% |
| 2qxlB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 42.0 | 3.82e-01 | 88.4% | 89.6% |
| 2jjxA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 42.0 | 3.21e-01 | 89.5% | 81.1% |
| 3aawC01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 45.0 | 3.50e-01 | 100.0% | 43.6% |
| 6x50A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.30e-01 | 91.6% | 90.0% |
| 7d73E01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.51 | 43.0 | 3.34e-01 | 94.7% | 81.1% |
| 4w7sA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.93e-01 | 100.0% | 37.6% |
| 1z5zB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 3.14e-01 | 100.0% | 46.5% |
| 8azbA01 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.50 | 38.0 | 3.00e-01 | 82.1% | 91.0% |
| 1hv8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 35.0 | 3.05e-01 | 100.0% | 45.0% |
| 5f2hA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 40.0 | 3.28e-01 | 87.4% | 100.0% |
| 2hyiC02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 42.0 | 3.54e-01 | 93.7% | 83.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3743668 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.71 | 58.0 | 4.35e-01 | 89.5% | 94.5% |
| 4020211 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.63 | 47.0 | 4.08e-01 | 77.9% | 87.6% |
| 5025298 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.61 | 49.0 | 3.99e-01 | 87.4% | 82.7% |
| 4969466 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 43.0 | 3.63e-01 | 100.0% | 44.2% |
| 3946975 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 47.0 | 3.72e-01 | 91.6% | 84.4% |
| 4474426 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 3.76e-01 | 88.4% | 93.9% |
| 3429332 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 48.0 | 3.78e-01 | 91.6% | 72.0% |
| 3688531 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.57 | 45.0 | 2.98e-01 | 87.4% | 78.8% |
| 5013134 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 50.0 | 4.04e-01 | 100.0% | 85.9% |
| 3985022 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.56 | 46.0 | 3.76e-01 | 92.6% | 90.0% |
| 4017124 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.56 | 46.0 | 3.46e-01 | 91.6% | 94.2% |
| 4926805 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.55 | 48.0 | 3.59e-01 | 100.0% | 80.8% |
| 4549410 | 506.2.1.0 ↗ | beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain | 0.55 | 40.0 | 2.34e-01 | 100.0% | 8.1% |
| 2637420 | 2487.1.1.7 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA | 0.55 | 45.0 | 3.93e-01 | 90.5% | 94.6% |
| 5072428 | 4143.1.1.0 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like | 0.55 | 38.0 | 3.95e-01 | 72.6% | 87.8% |
| 3277971 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.54 | 41.0 | 3.29e-01 | 82.1% | 90.5% |
| 3190624 | 2004.1.1.240 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C | 0.53 | 44.0 | 3.51e-01 | 93.7% | 84.8% |
| 4024538 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 40.0 | 3.22e-01 | 80.0% | 71.6% |
| 3285243 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 44.0 | 3.30e-01 | 92.6% | 76.5% |
| 4269009 | 2004.1.1.240 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Utp25_C | 0.53 | 44.0 | 3.53e-01 | 93.7% | 82.9% |
| 3519517 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.52 | 44.0 | 3.51e-01 | 92.6% | 82.6% |
| 3813343 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.52 | 42.0 | 3.22e-01 | 89.5% | 70.0% |
| 3429152 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.52 | 44.0 | 3.45e-01 | 92.6% | 69.5% |
| None | — | 0.52 | 46.0 | 2.71e-01 | 100.0% | 81.1% | |
| 3960047 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 42.0 | 3.27e-01 | 89.5% | 76.7% |
| 3324940 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 35.0 | 3.85e-01 | 97.9% | 89.3% |
| 3990622 | 3075.1.1.1 ↗ | a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › PFU | 0.51 | 30.0 | 3.46e-01 | 96.8% | 80.0% |
| 4414072 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 42.0 | 3.50e-01 | 92.6% | 77.7% |
| 3577853 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.51 | 40.0 | 3.15e-01 | 90.5% | 80.4% |
| 3596381 | 2004.1.1.364 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C | 0.51 | 37.0 | 2.38e-01 | 100.0% | 14.5% |
| 3459777 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.51 | 42.0 | 3.19e-01 | 94.7% | 71.4% |
| 4610968 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.51 | 35.0 | 2.74e-01 | 100.0% | 31.4% |