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JM101

Euk-Vir

Macaca_fuscata_rhadinovirus

JM101__YP_238404__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:
YP_238404 ↗
Protein ID:
JM101
Kingdom:
euk

Quality

69.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-110
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00605.24 best IRF 45.9 8.50e-12 100.0% 96.2%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pi0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.88 77.0 7.97e-01 100.0% 97.9%
1if1B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 77.0 7.72e-01 100.0% 94.2%
2o61A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 80.0 7.82e-01 100.0% 98.2%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 78.0 7.79e-01 100.0% 96.2%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 7.03e-01 100.0% 95.8%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.61 37.0 4.26e-01 100.0% 88.6%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 4.01e-01 100.0% 69.6%
2mbfA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 4.26e-01 100.0% 78.4%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.95e-01 100.0% 81.9%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 4.25e-01 100.0% 88.8%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 36.0 3.60e-01 100.0% 66.7%
2qndA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 32.0 3.51e-01 78.6% 75.0%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 35.0 3.67e-01 87.4% 75.3%
3hheA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 32.0 3.57e-01 80.6% 80.8%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.97e-01 93.2% 76.7%
2fyfA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 34.0 3.46e-01 98.1% 66.7%
4mt1A03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.51 31.0 3.18e-01 80.6% 62.2%
3lewA01 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 40.0 2.91e-01 88.3% 32.0%
1t0tV02 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.50 33.0 3.22e-01 92.2% 60.4%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547704 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.89 85.0 8.14e-01 100.0% 89.6%
3527527 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.86 82.0 7.86e-01 100.0% 90.4%
3772154 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.84 79.0 7.40e-01 100.0% 89.4%
223480 101.1.2.11 alpha arrays › HTH › HTH › winged helix domain › IRF 0.84 78.0 7.79e-01 100.0% 96.2%
1546475 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 70.0 7.01e-01 100.0% 96.2%
3676524 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 45.0 4.21e-01 100.0% 59.2%
3470890 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.79e-01 100.0% 81.0%
3385456 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.62 35.0 3.86e-01 78.6% 68.2%
3690383 304.4.1.58 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dehydratase_hem 0.61 36.0 3.62e-01 78.6% 57.1%
4117418 144.1.1.1 alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.61 31.0 3.85e-01 71.8% 81.7%
4025377 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 42.0 4.55e-01 100.0% 85.9%
5073219 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 4.63e-01 99.0% 92.9%
5046905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 4.24e-01 100.0% 81.1%
3800806 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 32.0 3.74e-01 100.0% 77.1%
3238923 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.58 52.0 3.31e-01 100.0% 23.1%
3662349 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 41.0 3.98e-01 100.0% 64.2%
3278701 7523.1.1.17 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.56 45.0 3.77e-01 86.4% 73.1%
4264297 101.1.2.760 alpha arrays › HTH › HTH › winged helix domain › PF30824 0.56 38.0 3.56e-01 100.0% 54.1%
3250041 101.1.2.525 alpha arrays › HTH › HTH › winged helix domain › DUF7646 0.55 38.0 2.94e-01 100.0% 31.6%
4034172 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 4.47e-01 100.0% 92.2%
3784677 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.55 41.0 3.25e-01 100.0% 36.8%
3323745 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.55 48.0 3.79e-01 100.0% 58.3%
4310506 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.55 41.0 3.23e-01 100.0% 36.4%
3253867 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.55 39.0 3.60e-01 100.0% 57.0%
3209919 101.1.2.4 alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.54 39.0 3.96e-01 100.0% 78.0%
3700850 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.50e-01 100.0% 90.5%
4373972 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.54 42.0 4.27e-01 100.0% 84.6%
3727445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.71e-01 100.0% 70.5%
3735293 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.53 41.0 3.06e-01 100.0% 31.9%
3406890 304.120.1.9 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N 0.53 34.0 3.64e-01 90.3% 74.4%
3954637 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 38.0 3.87e-01 100.0% 77.0%
3801946 101.1.2.462 alpha arrays › HTH › HTH › winged helix domain › DUF7647 0.53 46.0 4.08e-01 100.0% 81.3%
4953109 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.52 36.0 3.69e-01 100.0% 75.8%
3279792 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.52 44.0 3.45e-01 92.2% 74.4%
3536760 304.7.1.20 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MBTP1_N 0.51 29.0 3.22e-01 79.6% 70.0%
4017175 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.51 42.0 3.28e-01 100.0% 39.2%
None 0.51 43.0 3.33e-01 92.2% 69.8%
146692 304.4.1.9 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Chlor_dismutase 0.51 32.0 3.17e-01 78.6% 57.0%
3917203 2003.1.5.14 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_3 0.50 43.0 3.16e-01 92.2% 57.8%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.50 41.0 3.22e-01 100.0% 39.5%
D2 high residues 119-138_172-340
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.82 69.0 7.04e-01 88.4% 89.0%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.82 44.0 6.03e-01 86.2% 100.0%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.79 68.0 6.68e-01 88.9% 89.6%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.79 67.0 6.41e-01 87.3% 81.9%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.77 68.0 6.83e-01 91.5% 91.6%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 64.0 6.71e-01 86.8% 94.3%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.75 48.0 5.92e-01 98.9% 98.4%
3ld7A00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.63 31.0 4.37e-01 87.8% 100.0%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 21.0 3.03e-01 94.2% 64.0%
3fcgB00 2.60.40.3110 Mainly Beta › Sandwich › Immunoglobulin-like › Outer membrane usher protein 0.60 19.0 3.15e-01 83.6% 74.6%
2bv4A00 2.60.120.400 Mainly Beta › Sandwich › Jelly Rolls › Calcium-mediated lectin 0.55 31.0 3.97e-01 92.1% 93.8%
5tk2B00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 28.0 3.74e-01 88.4% 100.0%
1d2oA01 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.54 30.0 3.81e-01 82.0% 94.4%
2f4pA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 29.0 3.40e-01 84.1% 73.1%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 27.0 3.76e-01 78.8% 98.9%
1ti2B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 23.0 3.23e-01 90.5% 85.7%
3hqxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 29.0 3.84e-01 97.9% 99.0%
3eo6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 28.0 3.65e-01 96.8% 93.4%
1u0tA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.52 36.0 4.27e-01 86.2% 99.3%
1z0sA02 2.60.200.30 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › Probable inorganic polyphosphate/atp-NAD kinase; domain 2 0.51 31.0 3.68e-01 88.9% 89.6%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.50 28.0 2.78e-01 77.8% 49.3%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.50 26.0 3.38e-01 93.7% 87.0%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3912381 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.84 73.0 6.83e-01 89.4% 79.1%
3796291 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.83 66.0 6.55e-01 87.8% 79.0%
3797402 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.83 66.0 6.55e-01 87.8% 79.0%
3914798 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.82 70.0 6.88e-01 88.4% 89.0%
3772155 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.82 70.0 6.51e-01 87.8% 76.4%
3270361 73.1.1.9 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.82 46.0 6.00e-01 86.8% 95.5%
3552204 73.1.1.9 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.81 45.0 5.69e-01 87.3% 88.7%
3912511 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.81 69.0 6.70e-01 88.4% 85.9%
3899206 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.81 69.0 6.74e-01 89.4% 82.0%
2142307 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 66.0 6.66e-01 88.9% 84.7%
3216688 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.80 72.0 6.65e-01 92.6% 92.2%
169139 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 68.0 6.26e-01 88.9% 76.7%
3470623 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 68.0 6.65e-01 87.8% 84.0%
3738478 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.79 43.0 5.85e-01 83.6% 100.0%
2069 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 68.0 6.24e-01 89.4% 72.8%
3490466 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 53.0 6.22e-01 95.2% 94.1%
3409563 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 67.0 6.36e-01 87.8% 80.8%
3939212 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 66.0 6.24e-01 87.8% 81.2%
3887924 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.78 67.0 6.56e-01 89.4% 86.8%
3933148 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 66.0 6.31e-01 87.8% 77.7%
3408201 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 66.0 6.31e-01 87.8% 80.0%
3646479 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.78 45.0 5.83e-01 87.3% 96.5%
3234709 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.77 69.0 6.64e-01 92.6% 92.3%
3604902 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.77 50.0 5.44e-01 99.5% 76.9%
3895000 73.1.1.6 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.77 66.0 6.52e-01 88.9% 86.4%
2722184 73.1.1.3 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.77 65.0 6.68e-01 87.3% 92.2%
3477791 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.76 41.0 5.60e-01 85.2% 100.0%
3743148 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.76 43.0 4.97e-01 87.3% 73.8%
3673008 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.75 39.0 5.35e-01 97.9% 98.9%
3882303 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.74 50.0 5.81e-01 100.0% 92.9%
3858828 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 28.0 3.97e-01 74.6% 98.8%
3858934 11.1.4.74 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › FAM171A1-2-B_N 0.55 23.0 3.23e-01 89.9% 78.9%
3587405 10.32.1.285 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › RodZ_C 0.53 28.0 3.73e-01 82.5% 97.0%
4604576 4004.1.1.3 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD_kinase_C 0.51 37.0 4.00e-01 87.8% 86.0%
3766606 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 31.0 3.51e-01 73.0% 77.9%
3503045 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 34.0 3.97e-01 81.0% 95.6%