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JM119

Euk-Vir

Macaca_fuscata_rhadinovirus

JM119__YP_238422__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:: YP_238422 ↗
Protein ID:: JM119
Kingdom:: euk

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

View cluster (122 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-173

PDB

Domain cluster: rep: ribonucleotide_reductase_subunit_1__YP_401655__Human_gammaherpesvirus_4__10376__D15-179

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00317.27 best	Ribonuc_red_lgN	39.4	6.90e-10	39.0%	53.2%

D2 medium residues 174-214_448-482

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rg8A04	1.10.287.1240	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.53	31.0	3.35e-01	93.4%	67.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3864304	108.1.1.140 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_EFCAB10_C	0.50	29.0	2.97e-01	73.7%	58.7%

D3 medium residues 215-321_377-429

PDB

Domain cluster: rep: IMGVR_UViG_3300042092_000730-3300042092-Ga0453238_010587_859_2079__D220-402

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	66.5	2.70e-18	68.1%	22.5%
PF02867.21	Ribonuc_red_lgC	49.6	3.50e-13	33.8%	9.7%

D4 medium residues 322-376

PDB

Domain cluster: rep: orf61__YP_009044444__Alcelaphine_gammaherpesvirus_2__138184__D298-350

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	26.8	2.80e-06	100.0%	8.0%

D5 medium residues 430-447_483-645

PDB

Domain cluster: rep: rr1__YP_009552690__Operophtera_brumata_nucleopolyhedrovirus__1046267__D445-618_684-706

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	144.4	6.70e-42	90.1%	29.4%

D6 medium residues 646-749

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02867.21 best	Ribonuc_red_lgC	59.6	3.40e-16	89.4%	14.3%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wghA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.89	73.0	4.34e-01	96.2%	13.8%
2hsjD00	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.58	47.0	3.76e-01	89.4%	69.2%
3v4dB00	3.30.1330.40	Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like	0.56	39.0	3.69e-01	71.2%	78.4%
2bb0A02	3.20.20.140	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases	0.55	48.0	3.55e-01	99.0%	46.3%
1szpB02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.55	40.0	3.19e-01	76.9%	46.4%
4fr2A01	3.40.50.1970	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	36.0	3.01e-01	95.2%	37.5%
3f4aA00	3.40.250.10	Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain	0.54	41.0	3.75e-01	81.7%	73.6%
1k92A01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.52	39.0	3.47e-01	81.7%	78.8%
4ze8A03	3.10.105.10	Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3	0.52	40.0	3.22e-01	82.7%	45.2%
2xauA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.52	45.0	3.55e-01	100.0%	87.9%
4l69A02	3.40.1280.10	Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain	0.51	39.0	3.31e-01	80.8%	81.2%
3u7qB01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.51	39.0	3.52e-01	81.7%	67.8%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4015532	2500.1.1.0 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel	0.87	83.0	4.98e-01	100.0%	18.8%
996122	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.86	82.0	4.95e-01	100.0%	18.7%
4822330	2500.1.1.2 ↗	a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC	0.82	74.0	4.62e-01	93.3%	42.8%
3977807	2002.5.1.1 ↗	a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL	0.66	49.0	4.03e-01	76.9%	72.1%
5014285	2004.1.1.1200 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835	0.61	42.0	3.78e-01	76.0%	51.0%
4601377	2005.1.1.27 ↗	a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › QueC	0.57	44.0	3.49e-01	83.7%	89.8%
3823818	207.1.1.183 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_2, FBD, LRR_At5g56370	0.56	46.0	3.18e-01	92.3%	57.4%
3623055	2484.1.1.42 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hexokinase_2	0.56	40.0	3.15e-01	76.9%	89.4%
4829357	3315.1.1.1 ↗	a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41	0.55	44.0	3.55e-01	91.3%	42.9%
3606629	2007.1.2.28 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase_1	0.54	42.0	3.63e-01	83.7%	88.5%
4099134	7534.1.1.1 ↗	a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf	0.52	40.0	3.17e-01	82.7%	72.3%
4015641	7510.1.1.0 ↗	a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like	0.52	38.0	3.42e-01	77.9%	70.0%
3598776	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.52	45.0	3.51e-01	100.0%	80.0%