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JM32
Euk-VirMacaca_fuscata_rhadinovirus
JM32__YP_238335__Macaca_fuscata_rhadinovirus__272551
Identity
- Accession:
- YP_238335 ↗
- Protein ID:
- JM32
- Kingdom:
- euk
Quality
80.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Rhadinovirus›
Macaca_fuscata_rhadinovirus
TaxID: 272551
Cluster
View cluster (77 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 222-238_263-370
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_010085894__Wood_mouse_herpesvirus__432370__D202-318
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 92.2 | 4.30e-26 | 88.0% | 20.7% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.67 | 25.0 | 3.29e-01 | 80.8% | 57.5% |
| 5wvoC02 | 1.10.10.2230 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 36.0 | 4.13e-01 | 100.0% | 75.0% |
| 3bg3A04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 20.0 | 3.17e-01 | 79.2% | 70.2% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.53 | 25.0 | 3.40e-01 | 96.8% | 90.3% |
| 2rq5A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.52 | 32.0 | 3.31e-01 | 99.2% | 63.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2799838 | 3424.1.1.1 ↗ | alpha arrays › Virion protein UL25 › Virion protein UL25 › Virion protein UL25 › Herpes_UL25 | 0.89 | 86.0 | 5.81e-01 | 100.0% | 36.6% |
| 4093066 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.55 | 33.0 | 3.88e-01 | 99.2% | 91.3% |
| 3764209 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 29.0 | 2.86e-01 | 97.6% | 52.3% |
D2
medium
residues 127-142_239-262_371-432
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 37.4 | 1.70e-09 | 66.7% | 12.6% |
D3
medium
residues 143-219_433-547
Domain cluster:
rep: DNA_packaging_tegument_protein_UL25__YP_009054940__Equid_alphaherpesvirus_3__80341__D158-233_380-417_449-491_503-595
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01499.22 best | Herpes_UL25 | 93.2 | 2.10e-26 | 49.0% | 17.5% |
| PF01499.22 | Herpes_UL25 | 99.9 | 2.00e-28 | 41.7% | 12.8% |