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JM42

Euk-Vir

Macaca_fuscata_rhadinovirus

JM42__YP_238345__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:
YP_238345 ↗
Protein ID:
JM42
Kingdom:
euk

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-56
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i7dA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 44.0 3.25e-01 87.5% 50.0%
4a1nA01 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.51 37.0 2.54e-01 82.1% 36.7%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3716583 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.56 43.0 2.81e-01 89.3% 64.1%
D2 medium residues 57-128
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.57 34.0 2.91e-01 94.4% 34.5%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.55 34.0 3.68e-01 93.1% 75.9%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 40.0 3.31e-01 94.4% 45.4%
4qhzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 42.0 3.09e-01 100.0% 72.8%
2ciuA00 3.10.450.320 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 0.50 34.0 2.93e-01 70.8% 61.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1489668 3936.1.1.1 ↗ a+b complex topology › Herpesvirus UL21 N-terminal domain › Herpesvirus UL21 N-terminal domain › Herpesvirus UL21 N-terminal domain › Herpes_UL21 0.67 58.0 4.35e-01 100.0% 38.0%
3538071 5.1.4.61 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PAN2_N 0.52 45.0 2.90e-01 100.0% 37.3%
4929053 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 35.0 3.58e-01 87.5% 72.9%
4352333 3264.1.1.0 ↗ 0.50 38.0 2.92e-01 91.7% 36.8%