JM43

Euk-Vir

Macaca_fuscata_rhadinovirus

JM43__YP_238346__Macaca_fuscata_rhadinovirus__272551

Identity

66.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

View cluster (22 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-205

PDB

Domain cluster: rep: hypothetical_protein__YP_009551834__Rhinolophus_gammaherpesvirus_1__2054179__D30-81_138-219

D2 high residues 216-371

PDB

Domain cluster: rep: ORF16__NP_733869__Callitrichine_gammaherpesvirus_3__106331__D190-345

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03043.21 best	Herpes_UL87	111.3	7.20e-32	100.0%	29.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z16B01	1.20.91.10	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Influenza matrix M1, N-terminal subdomain 1	0.64	32.0	4.30e-01	79.5%	93.6%
2gscC00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.53	36.0	4.21e-01	85.9%	99.1%
2uvaG03	3.30.70.3320	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	34.0	3.92e-01	79.5%	92.6%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3660	633.10.1.1 ↗	alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › 23S_rRNA_IVP	0.50	35.0	4.05e-01	85.3%	99.1%

D3 medium residues 407-438_455-583

PDB