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JM5

Euk-Vir

Macaca_fuscata_rhadinovirus

JM5__YP_238308__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:: YP_238308 ↗
Protein ID:: JM5
Kingdom:: euk

Quality

74.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1010-1077

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	33.4	1.20e-08	100.0%	5.8%

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1z1vA00	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.70	52.0	5.14e-01	76.5%	82.9%
3obfA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.65	50.0	3.75e-01	83.8%	55.1%
5ayvA02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.61	47.0	3.95e-01	85.3%	61.6%
4bxoA02	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.61	43.0	4.33e-01	73.5%	76.1%
2dodA00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.60	49.0	4.65e-01	92.6%	82.9%
5figA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.60	41.0	3.62e-01	70.6%	96.0%
3bulA01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.60	44.0	4.15e-01	80.9%	96.6%
2dflA01	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.59	42.0	4.36e-01	75.0%	91.7%
2vf8B02	1.20.1580.10	Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain	0.59	47.0	3.63e-01	88.2%	93.1%
2gscC00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.59	42.0	3.64e-01	76.5%	82.7%
5t3wA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.59	43.0	3.44e-01	82.4%	38.7%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.57	47.0	3.95e-01	94.1%	75.0%
5dvwA00	1.20.120.1160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	41.0	3.35e-01	83.8%	40.9%
2q83A02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.55	46.0	3.26e-01	98.5%	77.3%
2k85A00	1.10.10.440	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain	0.54	44.0	4.53e-01	97.1%	100.0%
4im9B00	1.10.860.10	Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A	0.53	41.0	3.42e-01	95.6%	43.7%
1m4rB00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.52	41.0	3.38e-01	91.2%	92.9%
1z6oA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.51	38.0	2.78e-01	82.4%	70.8%
3lssA01	1.10.287.40	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain	0.50	39.0	3.39e-01	86.8%	88.4%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4675464	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.70	49.0	4.85e-01	73.5%	80.0%
4058889	102.1.1.27 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5	0.69	47.0	4.98e-01	72.1%	86.7%
1731575	129.1.1.11 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C	0.65	51.0	4.06e-01	88.2%	54.7%
3744196	102.1.1.0 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like	0.65	44.0	4.82e-01	76.5%	96.0%
3934315	198.1.1.1 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2	0.65	51.0	5.00e-01	88.2%	96.0%
4148402	102.1.1.24 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_2	0.62	44.0	4.20e-01	75.0%	67.5%
4066899	102.1.1.10 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD,HHH_2	0.61	49.0	3.63e-01	88.2%	39.4%
3233890	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.60	43.0	4.39e-01	86.8%	80.0%
3946360	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.58	43.0	4.40e-01	86.8%	86.2%
None	—		0.57	37.0	3.06e-01	70.6%	37.5%
3684538	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.55	46.0	3.65e-01	98.5%	61.3%
3318544	150.1.1.78 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rx_N	0.55	38.0	3.68e-01	73.5%	86.3%
3599922	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	39.0	2.55e-01	85.3%	28.3%
3916718	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.50	37.0	3.18e-01	79.4%	60.0%

D2 medium residues 15-61_102-149_212-235

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6qp9B01	2.130.10.10	Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase	0.51	35.0	2.43e-01	71.4%	90.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3431778	102.1.3.19 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PF26180	0.52	33.0	2.70e-01	72.3%	34.4%

D3 medium residues 62-101_150-211_236-257_687-715

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	48.5	3.00e-13	42.5%	4.6%
PF00747.23	Viral_DNA_bp	30.2	1.00e-07	26.8%	3.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7679	4174.1.1.1 ↗	a+b complex topology › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › N-terminal domain in viral ssDNA binding protein › Viral_DNA_bp	0.90	71.0	5.66e-01	81.0%	80.3%

D4 medium residues 258-421_605-674

PDB

Domain cluster: rep: major_DNA_binding_protein__NP_042934__Human_betaherpesvirus_6A__32603__D217-426_621-688

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	154.0	4.40e-45	70.9%	14.6%
PF00747.23	Viral_DNA_bp	88.0	3.70e-25	31.2%	6.5%

D5 medium residues 422-484_868-901

PDB

Domain cluster: rep: single-stranded_DNA-binding_protein__YP_001033958__Gallid_alphaherpesvirus_2__10390__D473-534_915-970

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	69.1	1.90e-19	97.9%	6.6%

D6 medium residues 485-511_675-686_716-729_856-867_902-954_968-984

PDB

D7 medium residues 527-604_831-855

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	55.6	2.30e-15	78.6%	7.5%

CATH (29)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6xxvC00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.63	50.0	4.93e-01	83.5%	87.4%
5mlc900	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.62	48.0	4.76e-01	81.6%	87.9%
1u89A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.62	44.0	3.95e-01	90.3%	54.0%
2d2sA02	1.20.58.1220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain	0.62	53.0	5.39e-01	95.1%	96.0%
6vudA01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.62	49.0	4.84e-01	84.5%	85.3%
1dd5A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.61	49.0	4.81e-01	84.5%	85.3%
4oydB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.61	48.0	4.66e-01	84.5%	85.5%
2i7nA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.60	54.0	4.70e-01	98.1%	78.7%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	48.0	4.85e-01	84.5%	86.3%
3bxjB03	1.10.506.10	Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1	0.59	49.0	3.91e-01	93.2%	75.6%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.59	46.0	4.56e-01	83.5%	83.5%
1wu3I00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.58	46.0	3.92e-01	82.5%	91.3%
3anwA01	1.20.58.1030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	41.0	4.00e-01	73.8%	84.1%
2yevA03	1.20.120.80	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle	0.57	45.0	3.79e-01	86.4%	72.3%
1ldjA03	1.20.1310.10	Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats	0.57	43.0	4.23e-01	80.6%	85.2%
3f0cA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	49.0	4.43e-01	95.1%	78.5%
3axjB01	1.20.58.190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1	0.56	50.0	4.37e-01	100.0%	82.6%
2cz2A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.56	49.0	4.66e-01	100.0%	82.5%
1t72A02	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.55	41.0	4.28e-01	82.5%	82.7%
1bucA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.55	47.0	4.43e-01	95.1%	78.0%
4iw9A02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.54	48.0	4.72e-01	99.0%	89.4%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.54	42.0	4.20e-01	87.4%	81.1%
3urzA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	43.0	3.45e-01	85.4%	53.0%
3kbtA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.53	43.0	3.12e-01	87.4%	33.1%
3t5tB01	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.53	47.0	3.44e-01	99.0%	85.7%
2a9uA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.52	35.0	3.34e-01	91.3%	54.8%
2e8gA01	1.20.1440.150	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.51	41.0	3.89e-01	88.3%	71.8%
1ylmA00	1.20.120.580	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like	0.51	41.0	3.75e-01	86.4%	89.4%
1j8yF01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.51	40.0	4.27e-01	97.1%	100.0%

ECOD (32)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4319342	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.67	58.0	4.79e-01	95.1%	85.4%
3648733	310.2.1.1 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF	0.62	50.0	3.90e-01	84.5%	90.0%
4214713	604.9.1.13 ↗	alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › GET2	0.62	50.0	4.66e-01	84.5%	80.0%
3722363	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.61	50.0	4.25e-01	85.4%	83.7%
3264853	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.61	49.0	4.51e-01	86.4%	79.3%
4828003	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.61	49.0	4.66e-01	85.4%	83.5%
3743731	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.61	53.0	4.13e-01	93.2%	83.8%
3209632	604.5.1.0 ↗	alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895)	0.60	48.0	4.73e-01	85.4%	82.7%
3881583	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.60	49.0	4.15e-01	87.4%	79.4%
5044572	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.59	46.0	4.62e-01	83.5%	90.5%
3665603	109.1.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C	0.59	52.0	4.92e-01	100.0%	88.8%
3547405	604.1.1.24 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4456	0.59	47.0	4.29e-01	85.4%	81.5%
3839376	1075.1.2.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX	0.58	49.0	4.24e-01	93.2%	97.5%
3563871	603.1.1.121 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF30821	0.58	46.0	4.44e-01	84.5%	76.5%
3731685	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.58	46.0	3.82e-01	86.4%	83.2%
3201166	604.7.1.0 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A	0.58	46.0	4.20e-01	85.4%	78.5%
3581263	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.58	45.0	4.57e-01	88.3%	84.0%
3256262	375.10.1.1 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DNA_Pol	0.57	35.0	3.70e-01	97.1%	67.4%
3810885	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.57	49.0	3.70e-01	94.2%	69.4%
4228013	3455.1.1.0 ↗	alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors	0.56	36.0	3.34e-01	78.6%	49.6%
3592993	310.2.1.0 ↗	a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF	0.55	44.0	4.08e-01	87.4%	85.9%
4211999	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.54	37.0	3.49e-01	70.9%	86.9%
4942736	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.54	44.0	4.38e-01	88.3%	93.3%
3585539	101.1.17.0 ↗	alpha arrays › HTH › HTH › FF domain	0.53	44.0	4.07e-01	88.3%	76.9%
5063888	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.53	48.0	3.75e-01	100.0%	69.3%
4648750	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.52	46.0	3.61e-01	99.0%	64.8%
3276887	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	46.0	4.48e-01	99.0%	100.0%
4955442	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.52	46.0	3.64e-01	98.1%	67.9%
3989110	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.52	46.0	3.71e-01	99.0%	72.7%
3725527	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.52	42.0	3.76e-01	88.3%	62.7%
3386388	1075.5.1.1 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE	0.51	45.0	3.58e-01	99.0%	67.3%
4029248	4984.1.1.0 ↗	alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain	0.51	41.0	3.71e-01	89.3%	74.7%

D8 medium residues 730-830

PDB

Domain cluster: rep: ORF6__YP_010084546__Macaca_nemestrina_rhadinovirus_2__123630__D750-828

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00747.23 best	Viral_DNA_bp	97.2	6.20e-28	100.0%	8.9%