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JM65

Euk-Vir

Macaca_fuscata_rhadinovirus

JM65__YP_238368__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:: YP_238368 ↗
Protein ID:: JM65
Kingdom:: euk

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-132

PDB

Domain cluster: rep: deoxyribonuclease__YP_009551847__Rhinolophus_gammaherpesvirus_1__2054179__D9-136

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	94.1	1.10e-26	91.1%	24.9%

D2 medium residues 177-232

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	52.3	5.50e-14	100.0%	12.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6p4wB01	3.40.91.30	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease ›	0.58	49.0	4.05e-01	100.0%	64.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.55	37.0	2.60e-01	91.1%	20.3%
3600635	3261.1.1.0 ↗	a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb	0.54	44.0	3.56e-01	98.2%	71.2%
3879829	2007.1.2.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor	0.53	43.0	2.79e-01	100.0%	71.5%
3466299	6.1.1.0 ↗	beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil	0.50	31.0	2.50e-01	85.7%	25.2%

D3 medium residues 349-438

PDB

Domain cluster: rep: BGLF5__YP_010087479__Phascolarctid_gammaherpesvirus_1__2249313__D335-399_422-438

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01771.24 best	Viral_alk_exo	110.4	1.30e-31	100.0%	19.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1pu1A00	3.30.300.100	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like	0.60	33.0	3.32e-01	82.2%	51.6%
3w1hA01	3.90.1150.110	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.56	42.0	3.38e-01	82.2%	86.2%
1tolA01	2.30.27.10	Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain	0.53	27.0	2.89e-01	98.9%	52.4%
4mt4A00	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.50	44.0	2.84e-01	100.0%	95.6%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4177742	327.13.1.2 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C	0.68	29.0	2.53e-01	72.2%	27.7%
4927204	223.2.1.0 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like	0.58	38.0	3.89e-01	91.1%	67.8%
3947692	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.56	34.0	2.97e-01	74.4%	38.6%
5073160	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.56	35.0	3.16e-01	77.8%	43.8%
3447934	263.1.1.1 ↗	a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF	0.55	30.0	2.98e-01	83.3%	48.0%
3592572	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.55	39.0	3.72e-01	81.1%	63.5%
142824	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.55	35.0	3.14e-01	80.0%	46.8%
3595752	4001.1.1.4 ↗	a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB	0.55	33.0	2.94e-01	82.2%	42.3%
3736781	7579.1.1.36 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3	0.54	37.0	2.53e-01	70.0%	76.1%
4956107	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.54	33.0	3.00e-01	75.6%	45.0%
3708462	221.1.1.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like	0.54	37.0	2.85e-01	84.4%	30.5%
3706348	221.1.4.0 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like	0.52	36.0	3.44e-01	84.4%	61.0%
3507049	327.3.1.0 ↗	a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain	0.52	37.0	3.60e-01	96.7%	66.0%
5072530	512.1.1.2 ↗	a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd	0.51	33.0	2.97e-01	84.4%	46.2%
3582020	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.51	30.0	3.23e-01	87.8%	68.0%
3826050	304.48.1.21 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1,Thg1C	0.51	37.0	2.64e-01	75.6%	68.4%
3182444	2003.1.5.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases	0.50	36.0	2.66e-01	80.0%	82.6%