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JM68

Euk-Vir

Macaca_fuscata_rhadinovirus

JM68__YP_238371__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:: YP_238371 ↗
Protein ID:: JM68
Kingdom:: euk

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

View cluster (61 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-126_199-224

PDB

Domain cluster: rep: helicase-primase_subunit__YP_004940263__Saimiriine_betaherpesvirus_4__1535247__D1-152

D2 medium residues 127-198

PDB

Domain cluster: rep: ORF40__YP_001129393__Human_gammaherpesvirus_8__37296__D123-197_285-298

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6w0pA02	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.69	36.0	2.18e-01	84.7%	8.4%
1q8iA03	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.67	42.0	3.15e-01	95.8%	24.9%
6eheA01	2.40.160.10	Mainly Beta › Beta Barrel › Porin › Porin	0.66	40.0	2.63e-01	80.6%	14.7%
3wirA03	2.60.420.10	Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3	0.55	35.0	3.63e-01	97.2%	68.1%
2g3aA02	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	43.0	3.83e-01	90.3%	99.0%
1y9wA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	42.0	3.77e-01	88.9%	99.0%
2wpwC00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.52	44.0	2.84e-01	93.1%	84.3%
7xr9E01	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.51	41.0	3.13e-01	94.4%	78.2%
1qw2A00	3.30.1980.10	Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC	0.51	39.0	3.49e-01	97.2%	58.8%
4epsA02	2.60.40.3570	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	40.0	3.39e-01	88.9%	69.6%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3239842	207.1.1.52 ↗	beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2	0.61	38.0	2.69e-01	97.2%	19.6%
3740172	11.1.1.378 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1	0.61	43.0	3.54e-01	75.0%	40.8%
3574513	5084.5.1.0 ↗	beta barrels › Outer membrane meander beta-barrels › Porins › Porin	0.59	40.0	2.93e-01	91.7%	26.2%
4944521	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.55	42.0	3.10e-01	84.7%	92.9%
4854476	7579.1.1.44 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6	0.55	44.0	2.89e-01	91.7%	95.7%
3988073	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.52	44.0	3.49e-01	95.8%	71.6%
11077	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.52	44.0	3.60e-01	95.8%	81.0%
3474122	189.1.1.2 ↗	alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP	0.52	27.0	1.75e-01	75.0%	10.6%
11074	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.51	43.0	3.51e-01	94.4%	81.4%
4012641	213.1.1.0 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat)	0.51	44.0	2.82e-01	100.0%	82.3%
3791609	247.1.1.0 ↗	a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase	0.51	43.0	3.07e-01	100.0%	31.1%
5041077	213.1.1.1 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1	0.51	41.0	3.17e-01	95.8%	67.4%
3575946	213.1.1.25 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_3	0.50	41.0	3.12e-01	93.1%	58.9%

D3 medium residues 225-336

PDB

Domain cluster: rep: ORF40__YP_001129393__Human_gammaherpesvirus_8__37296__D225-284_299-327

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03324.21 best	Herpes_HEPA	79.1	3.70e-22	56.2%	68.1%

D4 medium residues 337-532

PDB

Domain cluster: rep: ORF40__YP_010084584__Macaca_nemestrina_rhadinovirus_2__123630__D330-504

D5 medium residues 533-667

PDB

Domain cluster: rep: helicase-primase_complex__NP_065539__Alcelaphine_gammaherpesvirus_1__35252__D46-100_112-175

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05774.17 best	Herpes_heli_pri	92.7	2.90e-26	94.8%	82.7%