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JM98

Euk-Vir

Macaca_fuscata_rhadinovirus

JM98__YP_238401__Macaca_fuscata_rhadinovirus__272551

Identity

Accession:
YP_238401 ↗
Protein ID:
JM98
Kingdom:
euk

Quality

74.4 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_fuscata_rhadinovirus

TaxID: 272551

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-120
PDB
Domain cluster: rep: N9-5__YP_010084611__Macaca_nemestrina_rhadinovirus_2__123630__D17-120
D2 high residues 238-410
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10401.15 best IRF-3 37.0 4.20e-09 96.0% 78.9%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bviA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.85 77.0 7.53e-01 100.0% 88.5%
3dshA01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.80 76.0 7.18e-01 100.0% 87.1%
5e50A01 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.79 46.0 5.92e-01 97.7% 99.0%
7cd1D01 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.79 71.0 7.08e-01 97.1% 92.6%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.78 73.0 7.09e-01 100.0% 89.5%
2w3oB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.78 45.0 5.79e-01 100.0% 98.0%
2jpeA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.77 47.0 5.36e-01 100.0% 79.5%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 72.0 6.69e-01 100.0% 82.4%
4h87A00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.76 46.0 5.35e-01 99.4% 83.9%
1g6gB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.72 48.0 5.65e-01 98.8% 94.4%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 34.0 4.51e-01 99.4% 94.7%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 29.0 3.61e-01 98.8% 74.1%
4iikA00 3.60.40.20 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › 0.52 48.0 3.96e-01 100.0% 96.7%
3ke6B01 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.52 47.0 4.35e-01 98.8% 96.4%
1xdnA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.50 31.0 3.70e-01 95.4% 94.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3912381 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.83 79.0 7.17e-01 100.0% 77.3%
2142307 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.83 73.0 7.11e-01 100.0% 83.6%
3914798 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.83 79.0 7.50e-01 100.0% 88.5%
3899206 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.82 75.0 7.05e-01 100.0% 81.0%
3470623 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.81 76.0 7.16e-01 100.0% 84.0%
3772155 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.81 77.0 6.96e-01 100.0% 76.4%
2069 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 76.0 6.69e-01 100.0% 71.5%
169139 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 76.0 6.75e-01 100.0% 74.6%
3490466 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 59.0 6.70e-01 87.3% 97.0%
3738478 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.80 47.0 6.06e-01 96.0% 100.0%
3895000 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.80 75.0 7.13e-01 100.0% 85.9%
3912511 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.79 75.0 7.07e-01 100.0% 84.9%
3933647 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.79 75.0 7.06e-01 100.0% 86.0%
3270361 73.1.1.9 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.79 48.0 5.94e-01 98.8% 95.5%
3887924 73.1.1.6 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › IRF-3 0.79 75.0 7.06e-01 100.0% 84.9%
2722184 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 72.0 7.08e-01 98.8% 91.7%
3234709 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 74.0 6.93e-01 100.0% 84.7%
3933148 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 72.0 6.63e-01 100.0% 77.7%
3788149 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.78 47.0 5.93e-01 98.3% 99.0%
3999204 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.78 74.0 7.06e-01 100.0% 88.7%
3247678 73.1.1.3 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › MH2 0.77 73.0 7.03e-01 100.0% 91.3%
3552204 73.1.1.9 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.77 47.0 5.65e-01 100.0% 91.3%
3679555 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.76 43.0 5.03e-01 97.1% 76.8%
3592884 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.72 51.0 5.90e-01 100.0% 99.2%
3560822 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.71 43.0 4.95e-01 100.0% 80.0%
3664663 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.70 46.0 5.60e-01 96.0% 100.0%
3709505 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.70 49.0 5.78e-01 96.5% 99.2%
3972396 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 25.0 3.53e-01 85.5% 85.9%
4284515 10.12.1.5 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C 0.56 32.0 4.08e-01 98.3% 96.0%
3217506 9.1.1.50 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7042 0.53 34.0 4.04e-01 97.1% 91.7%
5048250 12.1.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.53 26.0 3.44e-01 86.7% 86.5%
4024026 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.51 47.0 3.92e-01 100.0% 98.0%