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JN022534.1__AEX65669.1__DIBBI_001__00001
Bact-VirJN022534.1__AEX65669.1__DIBBI_001__00001
Identity
- Accession:
- JN022534 ↗
- Kingdom:
- phage
Quality
65.7
mean pLDDT
Taxonomy
TaxID: 1129194
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-99
Domain cluster:
rep: OP046317.1__UVD33125.1__PEC14_1__00001__D1-127
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13481.13 best | AAA_25 | 34.9 | 1.70e-08 | 82.8% | 27.2% |
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hy1A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.76 | 51.0 | 3.88e-01 | 100.0% | 30.4% |
| 1fuyB01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.68 | 44.0 | 3.71e-01 | 100.0% | 39.0% |
| 1xi3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.68 | 41.0 | 3.23e-01 | 100.0% | 29.2% |
| 3ewaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 55.0 | 4.08e-01 | 100.0% | 34.9% |
| 1wznA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 40.0 | 3.26e-01 | 100.0% | 31.4% |
| 4u3aB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 52.0 | 3.78e-01 | 100.0% | 28.9% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 40.0 | 3.47e-01 | 100.0% | 38.9% |
| 8ouzD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 52.0 | 3.95e-01 | 100.0% | 38.4% |
| 7wjlA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.63 | 56.0 | 3.60e-01 | 100.0% | 21.7% |
| 4f8xA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 56.0 | 3.88e-01 | 100.0% | 31.0% |
| 3on1A00 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.62 | 31.0 | 3.19e-01 | 80.8% | 46.5% |
| 4w88B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 56.0 | 3.83e-01 | 100.0% | 32.4% |
| 2ekgA02 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.61 | 44.0 | 3.35e-01 | 100.0% | 30.9% |
| 1qo2A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 45.0 | 3.38e-01 | 100.0% | 32.1% |
| 7f8eA01 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.61 | 49.0 | 3.81e-01 | 100.0% | 39.5% |
| 1lbqA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 47.0 | 4.27e-01 | 90.9% | 61.2% |
| 3ephA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 41.0 | 2.99e-01 | 71.7% | 69.6% |
| 1dp4C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 41.0 | 3.23e-01 | 89.9% | 34.3% |
| 6zb8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 52.0 | 3.59e-01 | 100.0% | 36.9% |
| 6qkgA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 37.0 | 3.59e-01 | 100.0% | 56.8% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.58 | 50.0 | 3.43e-01 | 100.0% | 40.2% |
| 2g0tA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 42.0 | 3.39e-01 | 76.8% | 40.4% |
| 3pvtA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 44.0 | 3.17e-01 | 82.8% | 44.7% |
| 3pukA01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.57 | 35.0 | 3.21e-01 | 81.8% | 45.0% |
| 7ezyA01 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.57 | 36.0 | 3.44e-01 | 76.8% | 53.9% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.57 | 40.0 | 3.50e-01 | 90.9% | 48.0% |
| 2bgwB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 39.0 | 3.56e-01 | 89.9% | 54.2% |
| 3nv9A01 | 3.40.50.10380 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Malic enzyme, N-terminal domain | 0.55 | 44.0 | 3.55e-01 | 85.9% | 70.3% |
| 2g0tB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 40.0 | 3.54e-01 | 100.0% | 52.1% |
| 3i7tA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.55 | 43.0 | 4.08e-01 | 99.0% | 70.3% |
| 2ykgA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 40.0 | 3.15e-01 | 91.9% | 36.1% |
| 3quwA00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.54 | 44.0 | 4.14e-01 | 99.0% | 71.2% |
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.54 | 41.0 | 3.56e-01 | 81.8% | 54.1% |
| 4kp1A02 | 3.30.499.10 | Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 | 0.54 | 36.0 | 3.18e-01 | 96.0% | 45.3% |
| 2j5vB01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 44.0 | 3.42e-01 | 91.9% | 54.5% |
| 4h18A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 47.0 | 3.36e-01 | 100.0% | 52.1% |
| 5fc1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 46.0 | 3.12e-01 | 100.0% | 31.5% |
| 3tosA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 37.0 | 2.84e-01 | 75.8% | 66.9% |
| 1c9kB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 45.0 | 3.80e-01 | 100.0% | 57.2% |
| 2vf7B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 43.0 | 3.09e-01 | 99.0% | 31.4% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.51 | 34.0 | 3.33e-01 | 83.8% | 59.1% |
| 6c6bB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.35e-01 | 89.9% | 80.4% |
| 6wqbA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 45.0 | 4.06e-01 | 100.0% | 85.0% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046110 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.74 | 60.0 | 4.44e-01 | 100.0% | 35.6% |
| 173315 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.73 | 51.0 | 3.61e-01 | 100.0% | 24.4% |
| 3979830 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 63.0 | 3.99e-01 | 100.0% | 20.4% |
| 3445610 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 63.0 | 4.78e-01 | 100.0% | 42.8% |
| 5071494 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.71 | 51.0 | 3.90e-01 | 100.0% | 31.9% |
| 4943410 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.71 | 56.0 | 4.27e-01 | 100.0% | 36.2% |
| 4965658 | 2004.1.1.1217 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF7125 | 0.70 | 47.0 | 3.70e-01 | 100.0% | 33.2% |
| 5005192 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.67 | 47.0 | 3.53e-01 | 100.0% | 29.2% |
| 4986231 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.66 | 54.0 | 4.71e-01 | 100.0% | 59.1% |
| 5077007 | 2004.1.1.129 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Zot | 0.66 | 52.0 | 4.00e-01 | 100.0% | 38.6% |
| 5072202 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.65 | 47.0 | 3.76e-01 | 74.7% | 53.2% |
| 4862955 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.65 | 52.0 | 4.58e-01 | 100.0% | 58.3% |
| 4970710 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.65 | 54.0 | 4.19e-01 | 100.0% | 40.8% |
| 388141 | 2007.1.14.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX | 0.64 | 41.0 | 3.83e-01 | 83.8% | 51.6% |
| 4974886 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.64 | 53.0 | 4.04e-01 | 100.0% | 40.0% |
| 3609528 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.63 | 43.0 | 3.32e-01 | 81.8% | 33.2% |
| 3271039 | 2006.1.4.19 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N | 0.62 | 40.0 | 3.83e-01 | 73.7% | 55.7% |
| 3023030 | 2004.1.1.64 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › APS_kinase | 0.61 | 40.0 | 3.88e-01 | 77.8% | 58.6% |
| 4859486 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.61 | 42.0 | 3.60e-01 | 80.8% | 45.5% |
| 3921534 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.61 | 56.0 | 4.01e-01 | 100.0% | 39.3% |
| 4201609 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.60 | 42.0 | 3.21e-01 | 73.7% | 41.0% |
| 4248888 | 2004.1.1.517 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29468 | 0.59 | 44.0 | 3.73e-01 | 77.8% | 60.1% |
| 3620736 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.59 | 53.0 | 4.25e-01 | 100.0% | 51.8% |
| 5075266 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.59 | 49.0 | 3.78e-01 | 100.0% | 39.6% |
| 4935322 | 301.2.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS | 0.58 | 44.0 | 3.72e-01 | 81.8% | 50.9% |
| 4153367 | 2003.1.1.61 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR | 0.58 | 51.0 | 3.67e-01 | 100.0% | 33.8% |
| 4031881 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.58 | 44.0 | 3.67e-01 | 81.8% | 56.6% |
| 4986412 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.57 | 41.0 | 3.67e-01 | 73.7% | 67.4% |
| 4450485 | 2004.1.1.21 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA | 0.57 | 50.0 | 4.24e-01 | 100.0% | 57.1% |
| 3478463 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.57 | 42.0 | 3.60e-01 | 76.8% | 67.1% |
| 4941152 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 47.0 | 3.33e-01 | 96.0% | 65.6% |
| 5002257 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.56 | 46.0 | 3.58e-01 | 92.9% | 51.7% |
| 3603907 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.55 | 40.0 | 3.46e-01 | 91.9% | 49.3% |
| 3806511 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.55 | 42.0 | 3.74e-01 | 80.8% | 57.1% |
| 3645871 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.55 | 41.0 | 2.84e-01 | 80.8% | 34.1% |
| 3320195 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.55 | 37.0 | 3.20e-01 | 72.7% | 44.5% |
| 5023021 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.54 | 38.0 | 3.56e-01 | 72.7% | 68.0% |
| 4935532 | 7550.1.1.4 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 | 0.54 | 38.0 | 3.50e-01 | 72.7% | 70.8% |
| 2167612 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.54 | 43.0 | 3.87e-01 | 87.9% | 80.0% |
| 3308798 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 40.0 | 3.51e-01 | 80.8% | 52.3% |
| 5061083 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.53 | 42.0 | 2.93e-01 | 100.0% | 24.5% |
| 4017378 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.53 | 38.0 | 3.27e-01 | 77.8% | 45.7% |
| 4928280 | 314.1.1.1 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 | 0.50 | 36.0 | 2.68e-01 | 74.7% | 30.4% |
D2
medium
residues 132-152_167-195
D3
medium
residues 196-286