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JN116823.1__AEV51894.1__X__00040
Bact-VirJN116823.1__AEV51894.1__X__00040
Identity
- Accession:
- JN116823 ↗
- Kingdom:
- phage
Quality
83.2
mean pLDDT
Taxonomy
TaxID: 1109713
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
rep: MH651189.1__AXQ65156.1__SEA_SCHMIDT_34__00034__D4-66
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13443.13 best | HTH_26 | 26.1 | 1.10e-05 | 71.2% | 82.5% |
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2awiA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.77 | 60.0 | 6.22e-01 | 87.7% | 91.0% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.72 | 53.0 | 5.71e-01 | 83.6% | 95.0% |
| 3bd1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.72 | 56.0 | 5.86e-01 | 89.0% | 95.4% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 53.0 | 5.52e-01 | 90.4% | 88.2% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 53.0 | 5.53e-01 | 83.6% | 90.9% |
| 6b9sB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.70 | 49.0 | 4.96e-01 | 76.7% | 75.3% |
| 3b7hA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.69 | 55.0 | 5.46e-01 | 91.8% | 85.5% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 49.0 | 5.00e-01 | 80.8% | 81.2% |
| 2ebyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 52.0 | 5.17e-01 | 84.9% | 83.5% |
| 2xi8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 52.0 | 5.47e-01 | 91.8% | 92.4% |
| 2kt0A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 40.0 | 4.83e-01 | 72.6% | 91.5% |
| 5yclA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 50.0 | 5.27e-01 | 86.3% | 90.6% |
| 6f8hC00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 52.0 | 4.86e-01 | 84.9% | 71.0% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 51.0 | 5.29e-01 | 84.9% | 92.4% |
| 1r69A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 49.0 | 5.14e-01 | 89.0% | 92.1% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 50.0 | 5.00e-01 | 100.0% | 80.3% |
| 3g7dA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 48.0 | 4.56e-01 | 89.0% | 65.1% |
| 2hinA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 51.0 | 5.30e-01 | 93.2% | 90.9% |
| 3pxpA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 52.0 | 4.87e-01 | 87.7% | 81.7% |
| 3fymA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 51.0 | 4.97e-01 | 84.9% | 89.0% |
| 2ictA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 52.0 | 5.06e-01 | 87.7% | 82.7% |
| 2fjrA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 49.0 | 4.92e-01 | 82.2% | 77.6% |
| 2wusS00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 53.0 | 5.12e-01 | 87.7% | 86.6% |
| 3fyaB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.66 | 52.0 | 5.14e-01 | 87.7% | 81.8% |
| 1y9qA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 52.0 | 5.01e-01 | 93.2% | 77.6% |
| 2bnmA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 49.0 | 4.98e-01 | 90.4% | 83.8% |
| 3ivpD01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 48.0 | 4.82e-01 | 94.5% | 80.0% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 47.0 | 4.92e-01 | 89.0% | 89.4% |
| 2ofyA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 48.0 | 4.90e-01 | 80.8% | 85.7% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 50.0 | 5.14e-01 | 87.7% | 92.8% |
| 2da7A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.63 | 37.0 | 3.81e-01 | 74.0% | 60.6% |
| 1neqA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 50.0 | 5.00e-01 | 97.3% | 89.2% |
| 1ic8A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 42.0 | 3.94e-01 | 71.2% | 58.5% |
| 1furB03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 40.0 | 4.44e-01 | 84.9% | 96.1% |
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.58 | 39.0 | 4.06e-01 | 83.6% | 74.6% |
| 7pbkB02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 47.0 | 3.90e-01 | 90.4% | 76.3% |
| 1b0nA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 50.0 | 4.53e-01 | 100.0% | 91.3% |
| 7t2rC01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.58 | 39.0 | 4.36e-01 | 86.3% | 89.5% |
| 3p3lA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 45.0 | 2.85e-01 | 87.7% | 47.1% |
| 3i9v201 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.56 | 38.0 | 3.92e-01 | 79.5% | 72.2% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 36.0 | 4.04e-01 | 83.6% | 89.3% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 35.0 | 3.62e-01 | 94.5% | 72.1% |
| 7ar7E01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.53 | 39.0 | 4.12e-01 | 86.3% | 90.5% |
| 1kq4A00 | 3.30.1360.170 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 38.0 | 2.89e-01 | 82.2% | 92.6% |
| 8e9gE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.51 | 38.0 | 4.07e-01 | 89.0% | 93.7% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.79e-01 | 86.3% | 84.1% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.78e-01 | 80.8% | 92.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961370 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.87 | 80.0 | 7.58e-01 | 98.6% | 84.7% |
| 4060124 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.72 | 40.0 | 3.06e-01 | 82.2% | 25.8% |
| 5039762 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.71 | 61.0 | 5.61e-01 | 100.0% | 74.7% |
| 4075146 | 101.1.4.18 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 | 0.70 | 56.0 | 4.62e-01 | 86.3% | 51.5% |
| 2581392 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 53.0 | 5.41e-01 | 84.9% | 85.9% |
| 5030212 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.70 | 53.0 | 5.48e-01 | 83.6% | 91.4% |
| 4367316 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.68 | 54.0 | 4.72e-01 | 91.8% | 56.5% |
| 3963744 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.68 | 53.0 | 5.21e-01 | 89.0% | 78.8% |
| 1149503 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.67 | 50.0 | 5.00e-01 | 100.0% | 80.3% |
| 4253265 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.66 | 40.0 | 3.03e-01 | 83.6% | 27.3% |
| 3980765 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 40.0 | 3.03e-01 | 83.6% | 27.3% |
| 3590480 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.62 | 48.0 | 4.30e-01 | 89.0% | 59.0% |
| 5046018 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 38.0 | 3.69e-01 | 78.1% | 56.2% |
| 5053234 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 50.0 | 4.73e-01 | 93.2% | 91.1% |
| 3713487 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 36.0 | 3.98e-01 | 76.7% | 73.3% |
| 4069306 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.60 | 40.0 | 4.14e-01 | 79.5% | 71.4% |
| 3215991 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.60 | 40.0 | 4.20e-01 | 75.3% | 76.9% |
| 3218375 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 37.0 | 4.12e-01 | 71.2% | 83.6% |
| 5080663 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.59 | 40.0 | 4.23e-01 | 83.6% | 78.5% |
| 3587013 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.59 | 40.0 | 4.25e-01 | 71.2% | 85.0% |
| 4086835 | 101.1.1.29 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 | 0.59 | 36.0 | 3.53e-01 | 78.1% | 55.0% |
| 3644937 | 101.1.1.30 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3,Sigma70_r4 | 0.58 | 35.0 | 2.75e-01 | 78.1% | 27.5% |
| 3588965 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.57 | 47.0 | 4.01e-01 | 94.5% | 88.7% |
| 5070173 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.56 | 38.0 | 3.74e-01 | 83.6% | 63.7% |
| 4337360 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.56 | 39.0 | 3.85e-01 | 83.6% | 67.5% |
| 4345364 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.55 | 39.0 | 4.26e-01 | 83.6% | 90.0% |
| 4031257 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.55 | 37.0 | 3.91e-01 | 71.2% | 84.1% |
| 2791586 | 3697.1.1.1 ↗ | alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx | 0.53 | 39.0 | 3.54e-01 | 83.6% | 58.8% |
| 3241360 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.51 | 34.0 | 3.57e-01 | 84.9% | 76.9% |
| 3967726 | 101.1.6.16 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_22 | 0.50 | 38.0 | 3.66e-01 | 86.3% | 71.8% |
D2
high
residues 101-146