←Back to structures
JN116824.1__AEV51957.1__X__00021
Bact-VirJN116824.1__AEV51957.1__X__00021
Identity
- Accession:
- JN116824 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Taxonomy
TaxID: 1109714
Cluster
View cluster (12 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-105
Domain cluster:
rep: ON045087.1__UPU15914.1__X__00088__D84-142
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.64 | 53.0 | 5.24e-01 | 94.0% | 86.3% |
| 3v0aB04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.61 | 45.0 | 3.51e-01 | 80.6% | 98.7% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.61 | 43.0 | 3.78e-01 | 76.1% | 100.0% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.61 | 49.0 | 4.09e-01 | 95.5% | 55.7% |
| 3isxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.61 | 48.0 | 4.45e-01 | 88.1% | 100.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 43.0 | 4.29e-01 | 77.6% | 88.6% |
| 1oruA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.59 | 49.0 | 3.65e-01 | 94.0% | 97.8% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.59 | 48.0 | 4.32e-01 | 89.6% | 76.3% |
| 3be3A00 | 2.30.30.320 | Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain | 0.59 | 42.0 | 4.15e-01 | 79.1% | 94.7% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.29e-01 | 86.6% | 86.9% |
| 6v4xC01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 46.0 | 4.09e-01 | 89.6% | 78.0% |
| 4m78N00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 45.0 | 4.51e-01 | 88.1% | 95.8% |
| 1b34B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 49.0 | 4.81e-01 | 98.5% | 97.3% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 46.0 | 4.03e-01 | 91.0% | 69.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 44.0 | 4.29e-01 | 85.1% | 93.4% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 4.23e-01 | 82.1% | 91.5% |
| 1yloE02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.56 | 44.0 | 4.16e-01 | 88.1% | 100.0% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.56 | 45.0 | 4.15e-01 | 89.6% | 76.7% |
| 6epkA02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.56 | 39.0 | 3.86e-01 | 73.1% | 78.9% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.55 | 44.0 | 4.29e-01 | 89.6% | 100.0% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 4.21e-01 | 92.5% | 87.8% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 42.0 | 4.23e-01 | 86.6% | 100.0% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 41.0 | 4.18e-01 | 85.1% | 100.0% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.37e-01 | 92.5% | 100.0% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 43.0 | 4.28e-01 | 92.5% | 98.6% |
| 2qtlA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 42.0 | 3.63e-01 | 86.6% | 100.0% |
| 7mhwA01 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 38.0 | 3.56e-01 | 77.6% | 100.0% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.53 | 41.0 | 3.95e-01 | 86.6% | 100.0% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.52 | 40.0 | 4.22e-01 | 89.6% | 93.4% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 42.0 | 4.16e-01 | 95.5% | 95.9% |
| 2v4jA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.51 | 34.0 | 2.60e-01 | 71.6% | 70.7% |
| 1e0yA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.50 | 41.0 | 3.48e-01 | 88.1% | 63.1% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 42.0 | 3.32e-01 | 98.5% | 84.6% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 33.0 | 3.46e-01 | 70.1% | 91.9% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.50 | 41.0 | 3.44e-01 | 94.0% | 87.1% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.50 | 37.0 | 3.60e-01 | 79.1% | 100.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5048147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 54.0 | 4.67e-01 | 91.0% | 99.0% |
| 5003044 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.65 | 55.0 | 3.91e-01 | 92.5% | 59.5% |
| 4936547 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 4.87e-01 | 92.5% | 98.9% |
| 3401480 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.65 | 39.0 | 3.87e-01 | 79.1% | 57.1% |
| 4980648 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 51.0 | 5.04e-01 | 85.1% | 88.6% |
| 3282690 | 219.1.1.8 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 | 0.64 | 54.0 | 4.47e-01 | 100.0% | 52.5% |
| 3952707 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.03e-01 | 85.1% | 73.1% |
| 3302818 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.64 | 48.0 | 5.15e-01 | 92.5% | 98.2% |
| 4193599 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 4.60e-01 | 92.5% | 75.2% |
| 4064452 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.63 | 54.0 | 4.32e-01 | 98.5% | 47.9% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.63 | 55.0 | 4.37e-01 | 100.0% | 54.3% |
| 4967397 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 48.0 | 4.92e-01 | 83.6% | 93.8% |
| 3634374 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.62 | 44.0 | 4.99e-01 | 79.1% | 100.0% |
| 4975150 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 49.0 | 5.10e-01 | 92.5% | 98.3% |
| 3972956 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.62 | 52.0 | 4.21e-01 | 100.0% | 47.6% |
| 5036616 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.62 | 50.0 | 4.97e-01 | 89.6% | 90.0% |
| 4983553 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.60 | 47.0 | 3.38e-01 | 83.6% | 59.5% |
| 4926946 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.60 | 48.0 | 4.48e-01 | 89.6% | 92.9% |
| 1758803 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.59 | 47.0 | 4.78e-01 | 91.0% | 89.1% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.59 | 49.0 | 4.50e-01 | 92.5% | 77.8% |
| 3588979 | 4.1.1.137 ↗ | beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor | 0.59 | 45.0 | 4.70e-01 | 85.1% | 98.3% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.59 | 47.0 | 4.77e-01 | 89.6% | 100.0% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 46.0 | 4.29e-01 | 86.6% | 78.8% |
| 4854958 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.58 | 48.0 | 4.29e-01 | 92.5% | 72.9% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 47.0 | 4.68e-01 | 91.0% | 100.0% |
| 4019995 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 46.0 | 4.01e-01 | 91.0% | 89.1% |
| 3606838 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.20e-01 | 92.5% | 77.9% |
| 4991129 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 48.0 | 4.53e-01 | 98.5% | 97.6% |
| 4512995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 47.0 | 4.63e-01 | 91.0% | 100.0% |
| 3244451 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.57 | 45.0 | 4.16e-01 | 91.0% | 84.4% |
| 4987003 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.56 | 43.0 | 4.37e-01 | 85.1% | 100.0% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 48.0 | 4.29e-01 | 97.0% | 76.8% |
| 3341533 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.56 | 43.0 | 3.98e-01 | 89.6% | 90.5% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 49.0 | 4.41e-01 | 100.0% | 75.8% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.56 | 49.0 | 4.86e-01 | 98.5% | 100.0% |
| 3247656 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 48.0 | 4.14e-01 | 100.0% | 92.7% |
| 5073223 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 48.0 | 4.47e-01 | 98.5% | 89.4% |
| 4575051 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.55 | 43.0 | 4.11e-01 | 89.6% | 90.0% |
| 4204303 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 49.0 | 4.43e-01 | 100.0% | 78.9% |
| 4983255 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.55 | 44.0 | 4.29e-01 | 91.0% | 96.0% |
| 3947742 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.55 | 43.0 | 4.02e-01 | 86.6% | 77.6% |
| 3996398 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 45.0 | 4.21e-01 | 94.0% | 92.9% |
| 4990442 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.55 | 43.0 | 4.12e-01 | 89.6% | 90.0% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 44.0 | 4.49e-01 | 89.6% | 100.0% |
| 5046975 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.54 | 46.0 | 4.39e-01 | 97.0% | 93.8% |
| 4087314 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.54 | 44.0 | 4.20e-01 | 91.0% | 85.0% |
| 3701830 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 37.0 | 2.47e-01 | 71.6% | 29.3% |
| 4933363 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.54 | 44.0 | 4.29e-01 | 91.0% | 97.3% |
| 4974641 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.54 | 41.0 | 4.12e-01 | 86.6% | 97.1% |
| 3712189 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 46.0 | 4.21e-01 | 100.0% | 97.8% |
| 3922676 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.52 | 43.0 | 3.84e-01 | 92.5% | 93.0% |
| 3417047 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.52 | 42.0 | 4.31e-01 | 95.5% | 95.4% |
| 3784921 | 1.1.2.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N | 0.52 | 40.0 | 3.81e-01 | 88.1% | 97.6% |
| 1549365 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 41.0 | 3.92e-01 | 94.0% | 92.8% |
| 3972951 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.50 | 41.0 | 4.05e-01 | 94.0% | 93.3% |
| 3712748 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 38.0 | 3.17e-01 | 80.6% | 81.7% |