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JN116824.1__AEV51976.1__X__00040
Bact-VirJN116824.1__AEV51976.1__X__00040
Identity
- Accession:
- JN116824 ↗
- Kingdom:
- phage
Quality
73.7
mean pLDDT
Taxonomy
TaxID: 1109714
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-44
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7vcrA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.69 | 61.0 | 4.58e-01 | 100.0% | 51.0% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.69 | 56.0 | 5.61e-01 | 100.0% | 93.5% |
| 1eswA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 49.0 | 2.78e-01 | 86.0% | 35.4% |
| 2cu2A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.64 | 52.0 | 3.05e-01 | 100.0% | 11.6% |
| 2qsfA04 | 3.30.70.2460 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Rad4, beta-hairpin domain BHD3 | 0.58 | 45.0 | 4.01e-01 | 93.0% | 71.4% |
| 6hbzA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 47.0 | 3.34e-01 | 100.0% | 60.4% |
| 1xhcA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 39.0 | 3.83e-01 | 83.7% | 77.1% |
| 3kfvA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 43.0 | 3.49e-01 | 100.0% | 81.0% |
| 3vs8H00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 39.0 | 2.40e-01 | 100.0% | 61.2% |
| 2i0nA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 42.0 | 3.93e-01 | 100.0% | 98.2% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.50 | 39.0 | 2.80e-01 | 100.0% | 40.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009 | 4076.3.1.2 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF | 0.69 | 56.0 | 5.53e-01 | 100.0% | 87.8% |
| 3512066 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.66 | 52.0 | 3.70e-01 | 100.0% | 60.0% |
| 3503229 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.64 | 52.0 | 4.11e-01 | 100.0% | 90.5% |
| 4242915 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.64 | 51.0 | 5.09e-01 | 100.0% | 88.9% |
| 5017536 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.64 | 51.0 | 5.09e-01 | 100.0% | 88.9% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 53.0 | 5.10e-01 | 100.0% | 88.0% |
| 5069643 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 52.0 | 4.99e-01 | 100.0% | 86.8% |
| 4990834 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.63 | 52.0 | 5.08e-01 | 100.0% | 86.0% |
| 3958264 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.62 | 48.0 | 4.56e-01 | 100.0% | 70.9% |
| 4975580 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.62 | 49.0 | 4.59e-01 | 100.0% | 76.7% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.62 | 49.0 | 4.91e-01 | 97.7% | 91.1% |
| 5025566 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.62 | 50.0 | 4.74e-01 | 100.0% | 94.5% |
| 5009790 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.62 | 49.0 | 4.90e-01 | 97.7% | 100.0% |
| 5035097 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.62 | 49.0 | 4.95e-01 | 100.0% | 93.3% |
| 4068274 | 4076.1.1.1 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N | 0.62 | 48.0 | 4.53e-01 | 100.0% | 70.9% |
| 4291660 | 4076.3.1.7 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › DUF2635 | 0.62 | 49.0 | 4.85e-01 | 100.0% | 91.8% |
| 5025099 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 49.0 | 4.77e-01 | 97.7% | 84.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 50.0 | 4.98e-01 | 100.0% | 95.6% |
| 3236725 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.61 | 48.0 | 3.10e-01 | 100.0% | 53.1% |
| 4169249 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 49.0 | 4.87e-01 | 100.0% | 91.7% |
| 4939553 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 50.0 | 4.83e-01 | 100.0% | 86.0% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.61 | 51.0 | 5.08e-01 | 100.0% | 100.0% |
| 4944185 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.61 | 47.0 | 4.37e-01 | 100.0% | 69.2% |
| 5010674 | 4076.3.1.11 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 | 0.60 | 47.0 | 4.47e-01 | 100.0% | 72.7% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.60 | 48.0 | 4.79e-01 | 97.7% | 95.6% |
| 5001806 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.59 | 48.0 | 4.69e-01 | 100.0% | 87.5% |
| 4927873 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.59 | 47.0 | 4.40e-01 | 100.0% | 73.3% |
| 4993186 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.59 | 48.0 | 3.81e-01 | 100.0% | 96.2% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.59 | 48.0 | 4.81e-01 | 100.0% | 95.6% |
| 4950064 | 327.16.1.22 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF27275 | 0.57 | 43.0 | 3.85e-01 | 90.7% | 88.6% |
| 3516263 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.57 | 43.0 | 3.41e-01 | 93.0% | 83.6% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.56 | 42.0 | 4.24e-01 | 100.0% | 91.1% |
| 4116186 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.55 | 43.0 | 2.89e-01 | 90.7% | 44.7% |
| 2673942 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.55 | 40.0 | 2.73e-01 | 81.4% | 81.7% |
| 5013813 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 45.0 | 3.23e-01 | 100.0% | 54.0% |
| 5038458 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.54 | 41.0 | 4.06e-01 | 95.3% | 92.0% |
| 5044353 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 42.0 | 3.28e-01 | 88.4% | 79.0% |
| 3834810 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.52 | 41.0 | 3.08e-01 | 97.7% | 51.1% |
| 4378012 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.52 | 36.0 | 2.86e-01 | 79.1% | 57.1% |
| 5037765 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 36.0 | 3.37e-01 | 90.7% | 95.6% |
| 7175 | 862.1.1.2 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DUF1882 | 0.50 | 39.0 | 2.80e-01 | 100.0% | 40.9% |
D2
medium
residues 59-96
Domain cluster:
rep: MK433275.1__QAY17611.1__SEA_EMSQUAREDA_8__00008__D69-104
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07498.19 best | Rho_N | 26.6 | 6.40e-06 | 100.0% | 86.1% |