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JN116825.1__AEV52013.1__X__00017

Bact-Vir

JN116825.1__AEV52013.1__X__00017

Identity

Accession:
JN116825 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-77
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.75 43.0 3.07e-01 73.3% 20.2%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.74 43.0 3.34e-01 72.0% 28.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.72 57.0 4.36e-01 84.0% 88.6%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.72 50.0 3.65e-01 72.0% 32.6%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.70 50.0 3.58e-01 74.7% 28.9%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.69 41.0 3.60e-01 73.3% 39.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.66 41.0 4.94e-01 70.7% 100.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 40.0 3.46e-01 72.0% 39.0%
4iu2B01 2.60.40.3810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 50.0 4.36e-01 89.3% 83.8%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.62 38.0 3.32e-01 72.0% 39.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.62 46.0 3.79e-01 80.0% 69.1%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 42.0 3.47e-01 70.7% 41.4%
4oseB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 42.0 2.79e-01 72.0% 28.5%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 47.0 4.59e-01 84.0% 96.4%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 36.0 3.14e-01 70.7% 36.7%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.60 47.0 3.74e-01 88.0% 41.6%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.60 42.0 3.04e-01 73.3% 54.6%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.23e-01 72.0% 34.6%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 40.0 2.79e-01 72.0% 45.7%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 39.0 3.26e-01 72.0% 39.1%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 52.0 3.91e-01 100.0% 48.9%
1winA01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.58 42.0 3.65e-01 76.0% 98.3%
3lyxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 36.0 3.12e-01 74.7% 39.2%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.38e-01 74.7% 41.0%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.58 41.0 3.31e-01 76.0% 57.1%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 44.0 3.86e-01 89.3% 52.0%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.57 40.0 3.46e-01 77.3% 45.1%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 40.0 3.30e-01 89.3% 38.4%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.47e-01 77.3% 72.0%
3i1iB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.62e-01 78.7% 30.5%
2gj3A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 35.0 3.03e-01 73.3% 39.5%
4jhmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 47.0 4.04e-01 97.3% 59.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 35.0 2.92e-01 73.3% 33.1%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 34.0 2.78e-01 70.7% 33.3%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 2.74e-01 73.3% 26.4%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 47.0 3.73e-01 100.0% 79.5%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.97e-01 93.3% 95.5%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.54 43.0 3.66e-01 92.0% 51.5%
3qcpA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 42.0 3.35e-01 89.3% 62.6%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.53 47.0 3.29e-01 100.0% 42.7%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 37.0 3.27e-01 72.0% 63.3%
4mb8D00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.53 42.0 2.97e-01 92.0% 57.6%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.53 43.0 3.73e-01 89.3% 93.1%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 45.0 3.22e-01 100.0% 77.5%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 35.0 2.93e-01 74.7% 36.9%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 2.74e-01 73.3% 30.4%
7uvpA03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 36.0 2.97e-01 74.7% 81.4%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 2.74e-01 72.0% 33.3%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 2.96e-01 80.0% 37.2%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 37.0 3.17e-01 81.3% 49.2%
2gtlM02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.50 43.0 3.39e-01 98.7% 59.6%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1115776 295.1.1.5 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Whirly 0.73 57.0 4.20e-01 82.7% 80.8%
3731226 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.72 50.0 3.91e-01 77.3% 36.0%
3301984 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.70 43.0 4.89e-01 70.7% 83.6%
4097801 3518.1.1.0 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex 0.70 46.0 3.52e-01 72.0% 30.3%
4306567 206.1.2.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › Ins_P5_2-kin 0.70 52.0 3.31e-01 81.3% 64.5%
4248693 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.68 41.0 3.06e-01 73.3% 24.3%
3816372 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.67 55.0 3.75e-01 96.0% 24.8%
3216163 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 41.0 3.85e-01 70.7% 50.5%
4025179 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.65 39.0 2.81e-01 73.3% 21.5%
4558946 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.65 45.0 4.00e-01 73.3% 78.2%
3829251 9.1.1.34 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.64 53.0 4.15e-01 94.7% 70.9%
3468401 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 38.0 3.66e-01 70.7% 48.9%
3270456 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.63 40.0 2.95e-01 72.0% 24.6%
3525853 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.61 43.0 3.51e-01 74.7% 40.7%
3201205 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.61 39.0 2.64e-01 73.3% 16.1%
3771667 7026.1.1.4 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › Chorein_N 0.61 44.0 2.99e-01 76.0% 32.5%
4996498 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.61 47.0 3.48e-01 90.7% 31.5%
3372143 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 41.0 3.52e-01 70.7% 44.8%
4551342 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 39.0 3.76e-01 82.7% 57.6%
4280513 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.60 47.0 4.18e-01 85.3% 71.8%
3742137 11.1.1.114 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › COP-gamma_platf 0.60 44.0 3.58e-01 80.0% 56.9%
3504070 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.60 38.0 3.11e-01 70.7% 33.1%
3580851 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.60 41.0 3.04e-01 70.7% 26.5%
6380 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.59 40.0 3.23e-01 72.0% 34.6%
4030001 5.1.4.621 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Mcl1_mid 0.59 52.0 3.01e-01 98.7% 25.6%
4056450 706.2.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › G5 0.59 39.0 4.35e-01 74.7% 94.5%
3822726 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.59 42.0 2.86e-01 93.3% 18.8%
3271192 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.59 43.0 2.75e-01 77.3% 81.8%
3645656 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.58 40.0 3.93e-01 70.7% 77.5%
4236832 230.1.1.1 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.58 42.0 3.39e-01 78.7% 80.0%
4029724 883.1.1.6 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.57 39.0 3.13e-01 70.7% 35.6%
2834504 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 39.0 3.15e-01 72.0% 35.7%
4312776 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.57 38.0 3.09e-01 70.7% 35.1%
3575522 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.57 41.0 3.00e-01 76.0% 33.7%
3449246 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.57 46.0 3.43e-01 93.3% 33.8%
3301223 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 47.0 2.93e-01 92.0% 19.1%
4024695 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.57 49.0 3.88e-01 98.7% 81.2%
3709246 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.57 40.0 4.23e-01 74.7% 100.0%
3729350 5.1.4.411 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF2415 0.57 50.0 3.14e-01 100.0% 55.2%
3848773 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.56 38.0 2.98e-01 70.7% 31.5%
3324317 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.56 49.0 3.18e-01 96.0% 35.8%
3994973 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.56 48.0 4.00e-01 100.0% 54.6%
3796739 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 47.0 4.68e-01 97.3% 97.5%
3222710 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 46.0 4.56e-01 98.7% 89.7%
3462119 9.1.1.23 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3598_N 0.56 47.0 3.59e-01 96.0% 77.3%
4985492 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 49.0 3.38e-01 100.0% 56.3%
3615383 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.56 40.0 3.06e-01 76.0% 42.9%
5042619 868.1.1.0 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.55 45.0 3.41e-01 92.0% 35.8%
3373479 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 48.0 3.25e-01 96.0% 60.4%
3725346 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.55 42.0 3.52e-01 82.7% 50.0%
3939000 212.1.1.17 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_IV 0.55 38.0 3.11e-01 73.3% 67.6%
3692152 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.55 46.0 3.60e-01 97.3% 90.0%
3404065 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 46.0 4.53e-01 97.3% 90.0%
3593966 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.54 37.0 2.78e-01 72.0% 25.7%
3599587 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 44.0 3.40e-01 92.0% 37.8%
3836840 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 46.0 3.75e-01 100.0% 64.1%
3412465 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.83e-01 100.0% 57.2%
3201142 223.2.1.25 a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.52 41.0 3.57e-01 85.3% 58.3%
4173092 222.2.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins 0.52 42.0 3.83e-01 90.7% 100.0%
859 9.3.1.3 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C 0.52 45.0 3.85e-01 98.7% 79.8%
3212467 11.1.1.206 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17R_fnIII_D1 0.52 40.0 3.03e-01 85.3% 64.7%
3489971 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.61e-01 97.3% 56.7%
3640593 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 43.0 2.77e-01 100.0% 43.6%
3704007 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.51 42.0 3.08e-01 97.3% 61.3%
3599635 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.60e-01 94.7% 32.3%
3717243 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 44.0 2.81e-01 98.7% 47.0%