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JN116825.1__AEV52028.1__X__00032
Bact-VirJN116825.1__AEV52028.1__X__00032
Identity
- Accession:
- JN116825 ↗
- Kingdom:
- phage
Quality
50.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 170-256
Domain cluster:
rep: NC_048654.1__YP_009832427.1__HWB09_gp094__00098__D11-80
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ntdA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.67 | 58.0 | 3.97e-01 | 97.7% | 93.0% |
| 3guxA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 58.0 | 4.22e-01 | 100.0% | 88.7% |
| 3ij3A02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.65 | 57.0 | 3.93e-01 | 100.0% | 93.5% |
| 1tkjA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.64 | 57.0 | 4.03e-01 | 100.0% | 92.4% |
| 1hc7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 49.0 | 3.52e-01 | 83.9% | 79.2% |
| 5wb2B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 30.0 | 3.27e-01 | 100.0% | 53.4% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 40.0 | 4.11e-01 | 88.5% | 68.2% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.60 | 53.0 | 3.84e-01 | 100.0% | 90.5% |
| 3eytB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 43.0 | 3.64e-01 | 80.5% | 76.0% |
| 1cjxA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 39.0 | 3.25e-01 | 71.3% | 82.7% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 3.69e-01 | 80.5% | 81.5% |
| 3gl3D00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 41.0 | 3.59e-01 | 79.3% | 73.7% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 39.0 | 3.37e-01 | 77.0% | 84.7% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.53 | 42.0 | 3.17e-01 | 85.1% | 88.7% |
| 3kcmF00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 39.0 | 3.42e-01 | 80.5% | 74.6% |
| 5aigA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 37.0 | 3.31e-01 | 75.9% | 75.0% |
| 4gl6A01 | 3.10.450.570 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain | 0.51 | 37.0 | 3.85e-01 | 78.2% | 89.0% |
| 6qm7K00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 42.0 | 3.29e-01 | 94.3% | 74.3% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 33.0 | 3.11e-01 | 79.3% | 53.3% |
| 2lqoA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 38.0 | 3.85e-01 | 81.6% | 80.7% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.50 | 40.0 | 2.80e-01 | 90.8% | 58.9% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5009621 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.69 | 61.0 | 4.28e-01 | 100.0% | 88.2% |
| 5051814 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.66 | 58.0 | 4.09e-01 | 100.0% | 91.2% |
| 3246974 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.65 | 45.0 | 4.31e-01 | 71.3% | 80.0% |
| 4956218 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.64 | 49.0 | 3.49e-01 | 83.9% | 79.6% |
| 4338978 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.64 | 49.0 | 3.31e-01 | 83.9% | 83.8% |
| 4360386 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.63 | 49.0 | 3.29e-01 | 83.9% | 64.3% |
| 4943186 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.63 | 49.0 | 3.41e-01 | 83.9% | 76.6% |
| 4422543 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.63 | 36.0 | 3.60e-01 | 90.8% | 55.6% |
| 4979850 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.63 | 48.0 | 3.44e-01 | 83.9% | 81.8% |
| 4519238 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.62 | 48.0 | 3.38e-01 | 83.9% | 81.7% |
| 4976454 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.62 | 48.0 | 3.42e-01 | 83.9% | 80.4% |
| 5040572 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.62 | 48.0 | 3.15e-01 | 83.9% | 85.7% |
| 3426758 | 219.1.1.91 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › EDR1 | 0.62 | 50.0 | 3.77e-01 | 87.4% | 51.7% |
| 4230153 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.61 | 35.0 | 3.61e-01 | 90.8% | 58.8% |
| 4932714 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.60 | 47.0 | 3.32e-01 | 86.2% | 75.2% |
| 3267759 | 4.1.1.140 ↗ | beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom | 0.60 | 41.0 | 3.36e-01 | 70.1% | 95.6% |
| 4935920 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.58 | 49.0 | 3.55e-01 | 93.1% | 75.9% |
| 4349498 | 387.1.7.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Evasin-3 knottin scaffold | 0.57 | 24.0 | 3.32e-01 | 70.1% | 80.0% |
| 3460220 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.57 | 45.0 | 3.75e-01 | 86.2% | 68.4% |
| 3671807 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.56 | 42.0 | 4.35e-01 | 81.6% | 85.0% |
| 4018634 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 44.0 | 4.00e-01 | 85.1% | 87.0% |
| 3197197 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.55 | 40.0 | 3.75e-01 | 74.7% | 90.5% |
| 3629488 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.55 | 41.0 | 3.71e-01 | 78.2% | 83.5% |
| 4132922 | 314.1.1.3 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d | 0.55 | 48.0 | 3.58e-01 | 100.0% | 91.7% |
| 3228371 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 40.0 | 4.02e-01 | 88.5% | 76.7% |
| 3939992 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 46.0 | 4.32e-01 | 95.4% | 90.0% |
| 3227575 | 3009.1.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like | 0.53 | 47.0 | 3.58e-01 | 100.0% | 96.2% |
| 3725591 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 38.0 | 3.30e-01 | 74.7% | 68.9% |
| 3504070 | 243.1.1.13 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD | 0.52 | 39.0 | 3.26e-01 | 78.2% | 89.0% |
| 4974688 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.51 | 33.0 | 3.62e-01 | 81.6% | 82.9% |
| 4020073 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.90e-01 | 74.7% | 100.0% |
| 3234452 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 42.0 | 4.16e-01 | 92.0% | 93.3% |
| 3457289 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.51 | 40.0 | 3.53e-01 | 89.7% | 79.3% |
| 3185089 | 9.1.1.37 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF6314 | 0.50 | 38.0 | 3.07e-01 | 82.8% | 94.0% |
| 5078518 | 2008.1.1.220 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 | 0.50 | 40.0 | 3.78e-01 | 88.5% | 100.0% |
| 3383918 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.50 | 41.0 | 3.48e-01 | 93.1% | 72.9% |
D2
medium
residues 13-105