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JN116825.1AEV52058.1X__00062

Bact-Vir

JN116825.1__AEV52058.1__X__00062

Identity

Accession:: JN116825 ↗
Kingdom:: phage

Quality

95.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhodococcus_phage_REQ1

TaxID: 1109712

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-53_111-132_175-188

PDB

Domain cluster: representative

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pgcC01	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	41.0	3.86e-01	97.4%	59.8%
4atnA03	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.57	40.0	3.10e-01	98.7%	31.9%
4rmmA00	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.55	36.0	3.01e-01	100.0%	39.3%
3o4oB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	40.0	3.59e-01	100.0%	55.0%
3kh8B01	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.54	40.0	3.15e-01	98.7%	39.0%
2c9jA00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.54	49.0	3.54e-01	100.0%	42.3%
1omsA00	3.30.70.1050	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain	0.54	48.0	4.26e-01	100.0%	87.7%
1m6kA00	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.54	48.0	3.36e-01	100.0%	84.8%
1uisA00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.53	49.0	3.46e-01	100.0%	40.2%
4fmrA02	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.53	31.0	2.98e-01	70.5%	50.0%
3rwxA01	2.40.128.340	Mainly Beta › Beta Barrel › Lipocalin ›	0.53	38.0	3.37e-01	76.9%	87.5%
3wa5B00	2.60.120.1690	Mainly Beta › Sandwich › Jelly Rolls ›	0.53	41.0	3.51e-01	98.7%	52.4%
1jyoA00	3.30.1460.10	Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, ›	0.53	36.0	3.08e-01	100.0%	42.3%
1pn2B01	3.10.129.10	Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase	0.53	40.0	3.23e-01	98.7%	42.6%
2e0zA01	3.30.2400.20	Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold ›	0.52	44.0	3.96e-01	100.0%	67.3%
2ffsA00	3.30.530.20	Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain	0.52	45.0	3.74e-01	100.0%	78.6%
4i6yA02	3.30.70.420	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain	0.51	42.0	3.78e-01	100.0%	64.5%
4z9eA00	3.30.110.20	Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain	0.50	34.0	3.36e-01	100.0%	64.7%
4gafB03	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	35.0	3.15e-01	100.0%	51.8%
4aefA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	30.0	2.88e-01	97.4%	48.4%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5028718	223.8.1.0 ↗	a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain	0.64	45.0	4.05e-01	97.4%	54.3%
3516502	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.63	33.0	3.45e-01	70.5%	54.3%
3295356	328.3.1.0 ↗	a+b two layers › IF3-like › Translation initiation factor IF3, C-terminal domain › Translation initiation factor IF3, C-terminal domain	0.58	39.0	3.85e-01	98.7%	64.7%
3475901	319.1.1.1 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20	0.57	30.0	2.90e-01	70.5%	42.2%
3781788	222.1.1.27 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832	0.56	42.0	3.22e-01	100.0%	37.0%
3223311	222.1.1.4 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT	0.56	38.0	3.05e-01	100.0%	37.2%
4424375	222.1.1.28 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27762	0.55	42.0	3.59e-01	100.0%	51.7%
4110452	222.1.1.9 ↗	a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N	0.55	43.0	3.29e-01	100.0%	38.8%
3284176	331.3.1.0 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like	0.54	49.0	4.24e-01	100.0%	70.8%
3587042	331.3.1.32 ↗	a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF3284	0.51	46.0	3.83e-01	98.7%	77.0%
4951094	223.1.1.14 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4	0.51	46.0	3.76e-01	98.7%	77.1%
3675679	10.1.1.0 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases	0.51	43.0	3.07e-01	94.9%	100.0%
4963976	331.6.1.1 ↗	a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952	0.50	37.0	3.75e-01	100.0%	77.5%

D2 medium residues 54-110_133-174

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2h41A00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	34.0	3.52e-01	86.9%	72.6%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5059103	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.60	41.0	4.39e-01	89.9%	82.4%
4082863	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.51	27.0	3.10e-01	81.8%	70.0%