Back to structures

JN116826.1__AEV52128.1__X__00048

Bact-Vir

JN116826.1__AEV52128.1__X__00048

Identity

Accession:
JN116826 ↗
Kingdom:
phage

Quality

62.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-82
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 66.0 5.74e-01 96.2% 60.0%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 4.69e-01 81.1% 48.8%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 54.0 4.93e-01 83.0% 55.6%
3lsgA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 53.0 5.47e-01 73.6% 83.3%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 5.61e-01 92.5% 73.0%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 49.0 4.94e-01 73.6% 66.7%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 51.0 5.52e-01 75.5% 95.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 4.66e-01 83.0% 52.6%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 53.0 5.21e-01 81.1% 72.4%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.92e-01 83.0% 62.7%
6z4xA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 54.0 3.87e-01 81.1% 74.2%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 50.0 4.95e-01 83.0% 69.0%
5fgmA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.70e-01 94.3% 89.2%
4mloA03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 50.0 4.82e-01 75.5% 67.2%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 48.0 4.79e-01 81.1% 69.6%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.80e-01 83.0% 66.7%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 49.0 3.95e-01 75.5% 36.9%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.69 60.0 5.02e-01 100.0% 76.6%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 50.0 4.96e-01 83.0% 75.0%
1k78A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.90e-01 83.0% 69.7%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 4.70e-01 81.1% 66.7%
4pcqA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.16e-01 86.8% 86.0%
1bl0A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 59.0 5.70e-01 96.2% 95.0%
1xc5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 49.0 5.12e-01 83.0% 91.7%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 48.0 4.20e-01 81.1% 48.3%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 5.01e-01 86.8% 78.2%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 3.74e-01 75.5% 37.0%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 49.0 5.07e-01 86.8% 86.0%
3rmqA02 6.10.140.1650 Special › Helix non-globular › Helix Hairpins › 0.62 42.0 4.18e-01 75.5% 67.9%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 45.0 3.95e-01 79.2% 91.5%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 3.97e-01 81.1% 59.4%
2bmuB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.59 44.0 2.93e-01 81.1% 32.7%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 4.45e-01 100.0% 81.0%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 4.46e-01 100.0% 92.1%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 45.0 4.18e-01 98.1% 92.4%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 4.10e-01 100.0% 87.5%
6hxpA01 1.10.230.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 0.51 40.0 3.33e-01 100.0% 46.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3693312 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.94 80.0 7.65e-01 100.0% 80.0%
4034103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.93 67.0 6.69e-01 75.5% 74.5%
3735470 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.90 78.0 7.24e-01 100.0% 75.4%
3945549 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 62.0 6.37e-01 75.5% 80.0%
3589801 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.85 59.0 6.08e-01 73.6% 78.0%
3285933 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 60.0 5.75e-01 75.5% 66.7%
3944639 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.83 59.0 4.70e-01 75.5% 39.4%
3969487 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.83 59.0 6.11e-01 75.5% 83.7%
3090474 4020.1.1.0 a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.82 64.0 4.70e-01 92.5% 32.6%
3974554 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 57.0 5.91e-01 73.6% 78.0%
4992594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 56.0 6.05e-01 75.5% 84.4%
4192695 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.82 58.0 5.96e-01 75.5% 82.0%
3974068 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.81 58.0 5.34e-01 75.5% 59.4%
4319964 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.81 57.0 5.72e-01 75.5% 76.4%
4559046 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.81 67.0 5.37e-01 100.0% 46.7%
4010719 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.80 56.0 5.76e-01 73.6% 78.0%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.80 57.0 4.49e-01 75.5% 37.0%
3974443 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.80 57.0 5.49e-01 75.5% 68.3%
3947925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.80 57.0 5.89e-01 75.5% 81.6%
4194508 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 54.0 5.32e-01 73.6% 67.3%
4298388 101.1.1.74 alpha arrays › HTH › HTH › Three-helical HTH › tRNA_bind_3 0.80 65.0 5.03e-01 92.5% 41.7%
4643518 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.79 57.0 5.71e-01 100.0% 74.5%
4952035 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.79 53.0 5.11e-01 73.6% 61.7%
4993585 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.78 53.0 5.15e-01 75.5% 63.3%
3943189 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.78 55.0 5.49e-01 75.5% 74.5%
3945774 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.77 54.0 5.59e-01 75.5% 80.0%
4031535 101.1.1.275 alpha arrays › HTH › HTH › Three-helical HTH › GerE 0.77 60.0 5.78e-01 90.6% 76.7%
4134806 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 53.0 5.05e-01 75.5% 63.1%
3988160 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 53.0 5.10e-01 73.6% 66.7%
3957642 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 52.0 5.13e-01 73.6% 69.1%
3979666 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.75 53.0 5.13e-01 75.5% 68.3%
4465858 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.75 53.0 5.41e-01 75.5% 82.0%
3718418 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 56.0 4.83e-01 86.8% 51.8%
3280314 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 50.0 4.95e-01 73.6% 67.3%
4114758 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.74 52.0 4.97e-01 75.5% 64.1%
4974178 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.74 54.0 4.42e-01 83.0% 42.0%
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 52.0 4.50e-01 81.1% 47.1%
3947206 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.74 52.0 5.28e-01 75.5% 82.0%
3970263 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.74 52.0 5.02e-01 75.5% 68.3%
3228129 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.74 45.0 3.27e-01 86.8% 25.4%
3753093 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.73 61.0 5.75e-01 100.0% 75.4%
3956897 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.72 51.0 4.13e-01 75.5% 39.0%
3983051 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.72 50.0 5.01e-01 75.5% 74.5%
3288934 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.72 50.0 4.90e-01 75.5% 71.7%
3873677 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.72 60.0 5.55e-01 100.0% 71.4%
4067934 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 59.0 5.03e-01 100.0% 55.6%
3191582 101.1.1.3 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.71 63.0 4.74e-01 100.0% 71.5%
4055190 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 50.0 4.85e-01 75.5% 80.0%
5056682 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.11e-01 100.0% 65.7%
3289678 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 49.0 4.78e-01 75.5% 68.3%
1758881 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.70 64.0 5.87e-01 100.0% 100.0%
4495785 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.70 50.0 4.97e-01 75.5% 72.7%
4034594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 50.0 5.00e-01 75.5% 78.2%
4583223 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.70 51.0 5.05e-01 100.0% 76.4%
5052610 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.70 49.0 4.81e-01 83.0% 68.3%
3197445 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 51.0 5.05e-01 86.8% 76.4%
4606105 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.70 62.0 5.00e-01 100.0% 72.0%
3279784 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 49.0 4.93e-01 75.5% 72.7%
4979402 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.75e-01 81.1% 66.7%
3943148 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.69 51.0 5.21e-01 84.9% 86.0%
2565056 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.69 49.0 4.80e-01 75.5% 69.0%
5073990 101.1.1.540 alpha arrays › HTH › HTH › Three-helical HTH › HTH_10 0.67 56.0 5.01e-01 92.5% 70.7%
4030908 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.67 46.0 4.22e-01 75.5% 54.7%
3164420 101.1.1.63 alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.66 53.0 5.30e-01 100.0% 87.3%
4002185 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.66 58.0 5.18e-01 100.0% 81.3%
3943107 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 56.0 5.30e-01 96.2% 90.8%
4550738 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.66 57.0 5.37e-01 100.0% 93.8%
3404418 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.66 54.0 5.03e-01 100.0% 72.9%
5077607 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.65 46.0 4.52e-01 83.0% 68.3%
4954675 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 47.0 4.47e-01 81.1% 69.2%
3984810 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 44.0 4.43e-01 75.5% 72.7%
3963750 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 49.0 4.40e-01 100.0% 60.0%